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AT2G38950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 1894 Blast hits to 1417 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1050; Fungi - 421; Plants - 287; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9JeggNOG:KOG1246EMBL:AC005770EMBL:AY127026
EMBL:BT001088EMBL:CP002685EnsemblPlants:AT2G38950EnsemblPlants:AT2G38950.1
entrez:818480GeneID:818480Genevisible:Q8L7T6GO:GO:0003700
GO:GO:0005634GO:GO:0006355Gramene:AT2G38950.1hmmpanther:PTHR10694
hmmpanther:PTHR10694:SF54HOGENOM:HOG000241335InParanoid:Q8L7T6InterPro:IPR003347
InterPro:IPR003349InterPro:IPR004198KEGG:ath:AT2G38950KO:K11446
OMA:FDCGFNCPaxDb:Q8L7T6Pfam:PF02373Pfam:PF02375
Pfam:PF02928Pfam:Q8L7T6Pfscan:PS51183Pfscan:PS51184
PhylomeDB:Q8L7T6PIR:D84811PRIDE:Q8L7T6PRO:PR:Q8L7T6
PROSITE:PS51183PROSITE:PS51184ProteinModelPortal:Q8L7T6Proteomes:UP000006548
RefSeq:NP_181429.2SMART:SM00545SMART:SM00558SMR:Q8L7T6
STRING:3702.AT2G38950.1SUPFAM:SSF51197TAIR:AT2G38950UniGene:At.37227
UniProt:Q8L7T6
Coordinates (TAIR10) chr2:+:16261599..16265044
Molecular Weight (calculated) 79308.30 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.51
Length 708 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIEGVSTYL KSGNMDTISA PPGFVSQTSF VLRNVPRDKE SPRSVSRQEQ TTGFGTDDKD SCNMFLKSRP WIVHGHTIPS SEALRPKKTE VRRRRPLKVS
101: ETKVLEEAPV FNPTEEEFRD TLSYISSLRD RAEPYGICCV VPPPSWKPPC LLKEKQIWEA STFFPQVQLF GIQTENRKIK KEVDADSNDA ASEGVQLCRV
201: ERGPGYTLKS FKNFADTYKK SHFGMKDEVL GSENSSPSLK PNELIVADIE KEYRQIVESP LIEIGVLYGN DLDTATFGSG FPLSAPSESS KYSSGWNLNS
301: TAKLPGSLLS LEDCESVCVP RLSVGMCLSS QFWKSEKERL YSLCYLHVGA PRVWYSVAGC HRSKFKAAMK SFILEMSGEQ PKKSHNPVMM MSPYQLSVEG
401: IPVTRCVQHP GQYVIIFPGS YYSAFDCGFN CLEKANFAPL DWLPHGDIAV QVNQEMSKTS LISYDKLLFS AAREAVKCLK EYGLSKKNTA CYTRWNDSCG
501: TDGLFSNIIK SRIKLEKNRR EFLISSLESQ RMDKSYDAVN KRECCVCLGD LYLSAVNCSC SANRYSCLNH MRKLCACPCD RKSFLYRYTM DELNLLVEAL
601: EGKKLSSMFR WAGIDQKFCA SPATTSSKPE EDKGKETDEV TPCNITRKDV AAGTKDQTRV KARSLADILN VKDGNNDAKE TLESCSKKSN RPCDNDSSEA
701: NAPKKQKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)