AT3G18640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferases (TAIR:AT3G26850.2); Has 2096 Blast hits to 1919 proteins in 216 species: Archae - 1; Bacteria - 45; Metazoa - 857; Fungi - 199; Plants - 205; Viruses - 43; Other Eukaryotes - 746 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:6413617..6415829 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75585.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.15 | ||||||||||||||||||||||||||||||||||||
| Length | 676 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN GEARTRSRVS QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR 101: ARRDAGSYDR HKTRTQVSPT PIREFNKRGS DHLFDQSRSD HYGWEDNIRK PRETKYHTDD FREEAMMEGA RSSDYNNTDY PEDNSRIRRR RSEFTGEKET 201: QRRDGGDGEG GFHRSSNIPC KFFAAGTGFC RNGKYCRFSH HVADRKQPQD NNNNFYRQDN NNHTSGHNKW NDVERLDNGR VGGIEVSRAS KKGVSESKGN 301: GSSSWIDDME MSPDWNYGVQ ALKKPVKEDH SVGIIGQSSQ SRVLKDDQRS SGMFSHGGRT MAEKPVAASH QSYSNSVNVA PVETFNQNHN ALPYQSSLTA 401: GGSQQVLAAA ATNFSVGSNL SNLESGKVYQ DNHHSTVEKP VLVQNTVSRE QIDQITNISA SLAQFLANGQ PIPQLEQALQ LPLHSESVQP NQATTQSNVV 501: SSNPNQLWGL GMSTGAEGVP AVTASKISNV EEIQEVSLDP KENGDKKTDE ASKEEEGKKT GEDTNDAENV VDEDEDGDDD GSDEENKKEK DPKGMRAFKF 601: ALVEVVKELL KPAWKEGKLN KDGYKNIVKK VAEKVTGTMQ SGNVPQTQEK IDHYLSASKP KLTKLVQAYV GKIKKT |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)