AT1G76280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 14296 Blast hits to 5357 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 31; Fungi - 37; Plants - 13843; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28617948..28622581 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87764.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 773 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYRALWLSPL RFIVSSSSSK LTPYVSRGRG LSGIDNGAGC SCSRSVTTMI GNEFIRCQDE SKILQLQIVD ALRSGERQGA SALLFKLIQG NYSLSADDFH 101: DILYYCARSP DPVFVMETYS VMCKKEISLD SRSLLFIVKS LCNGGHLDKA SEFIHAVRED DRISPLLPIY NFFLGACART RSVYHASKCL ELMDQRRVGK 201: NGITYVALLK LAVFQRNLST VNDIWKHYVN HYNLDILSLR RFIWSFTRLG DLKSAYELLQ HMVYLALRGE FFVKSNRGKL HSTRLYIPVP SKDETGSEKF 301: AFGVTDRIVD CNSSSKVALP KGHNKILAIR VLRWSFNDVI HACGQSKNSE LAEQLMLQLK VMQQQNLKPY DSTLATVAAY CSKALQVDLA EHLLDQISEC 401: SYSYPFNNLL AAYDSLDQPE RAVRVLARMK ELKLRPDMRT YELLFSLFGN VNAPYEEGNM LSQVDCCKRI NAIEMDMMRN GFQHSPISRL NVLRALGAEG 501: MVNEMIRHLQ KAENLSAHSN MYLGTPTYNI VLHSLLEANE TDMVINIFKR MKSCGCPADV ATYNIMIDCC SLIHSYKSAC ALVSMMIRDG FSPKAVTFTA 601: LMKILLNDAN FEEALNLLDQ AALEEIHLDV LSYNTILRKA FEKGMIDVIE YIVEQMHREK VNPDPTTCHY VFSCYVEKGY HATAIEALNV LSLRMLNEED 701: KESLQDKKIE LEENFVMSED PEAETKIIEL FRKSEEHLAA ALLNLRWCAM LGGRIIWSED QSPWARALSN KYG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)