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AT3G20010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins in 1867 species: Archae - 89; Bacteria - 7985; Metazoa - 5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other Eukaryotes - 3416 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1574-MONOMEREC:3.6.4.-eggNOG:COG0553EMBL:AP002050
EMBL:CP002686EnsemblPlants:AT3G20010EnsemblPlants:AT3G20010.1entrez:821539
Gene3D:3.30.40.10Gene3D:3.40.50.300GeneID:821539GO:GO:0003677
GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0008270GO:GO:0016568GO:GO:0080188
Gramene:AT3G20010.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF777HOGENOM:HOG000241058
InterPro:IPR000330InterPro:IPR001650InterPro:IPR001841InterPro:IPR013083
InterPro:IPR014001InterPro:IPR017907InterPro:IPR018957InterPro:IPR027417
iPTMnet:Q9LHE4KEGG:ath:AT3G20010ncoils:CoilOMA:SSAICYE
Pfam:PF00097Pfam:PF00176Pfam:PF00271Pfscan:PS50089
Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q9LHE4PROSITE:PS00518
PROSITE:PS50089PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9LHE4
Proteomes:UP000006548RefSeq:NP_188635.1scanprosite:PS00518SMART:SM00487
SMART:SM00490SMR:Q9LHE4STRING:3702.AT3G20010.1SUPFAM:SSF52540
SUPFAM:SSF57850TAIR:AT3G20010UniGene:At.43523UniProt:Q9LHE4
Coordinates (TAIR10) chr3:+:6971352..6976340
Molecular Weight (calculated) 115481.00 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.54
Length 1047 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSAIEISSG SDSDDEVPPQ PVWPQTRTRM DPTWLSRRPL PTVDSHARAE HTNQAPPNGA SSDTSRPGVS KPFTGNGNTV NSRISSGSGA DYVRLSSEQA
0101: LKRTLPPSFN SPPLPARSGT NNISNASGSR VGVDYERPLS QQALKRTLPP SFNPPPLPSR SGTNNIRNAG GSRFGADYSH PAVSAVGNKS TFGDHYSGAH
0201: AEIGIQRGVN GVRILPPSLT HGTSASVLHH AGSSDPMHRF GGGEDRNPDN DERLVYQAAL QVLNQPMTES DLPPGTLSVP LMRHQKIALA WMFQKETSSF
0301: NCPGGILADD QGLGKTVSTI ALILKQKIVS QLKSESSCKQ ETEALVLDAD DESDNAKHES GSHVKPELKV SSNSETSVLS ACGNDENDSS DMEKAEDEEA
0401: NSSTRAFQWK RPAAGTLIVC PASVVRQWAR ELDEKVSEES KLSVLVYHGS NRTKDPNELA EYDVVVTTYA IVTNEAPNKF LVDEDENDEK NTDRYGLASG
0501: FSNNKKRKVV VGASKKSKRR GRKSTNDTSS EPDCGPLGKV GWFRIVLDEA QTIKNYRTQM ARSCCTLRAK RRWCLSGTPI QNTIDDLYSY FRFLRYDPYA
0601: VYKSFYSTIK VPISRNSCQG YKKLQAVLRA IMLRRTKGTL LDGKPIINLP PKVVNLSQVD FSVAERSFYK KLEADSRSQF KAYADAGTLS QNYANILLLL
0701: LRLRQACDHP QLVKRYNSDP VGKVSEAAVR RLPREARSRL INRLESSSAI CYECNEPPEK PVVTLCGHIF CYECVLEYIT GDENTCPVPR CKQQLARDVV
0801: FSESSLRNCT SDDSGCSSSH DNGLDRSVFQ KRDFCSSKIK AVLDILQSLS QPDSPNSAQH GQMPSSSRPY DDDDVTIVEP MRLHSSSPSQ GAVKTIIFSQ
0901: WTGMLDLVEL RILESGIEFR RLDGTMSLAA RDRAVKEFSK KPDVKVMLMS LKAGNLGLNM VAACHVILLD LWWNPTTEDQ AIDRAHRIGQ TRPVTVTRIT
1001: IKDTVEDRIL KLQEEKRTMV ASAFGEEHGG SSATRLTVDD LKYLFMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)