AT1G10240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1); Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 83; Plants - 1296; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3356835..3359271 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77735.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 680 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDDPGQMLL IYDDPSDQRS LSLDDASSTE ESPDDNNLSL EAVHNAIPYL GQIFLTHDTA YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA 101: GNTPIKTLSE GKPQRNRRSS RCGCQAYLRI SKLTELGSTE WRVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF SKTGISVQQM MRLLELEKCV 201: EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE KDPNFKFEFT LDANDKLENI AWSYASSIQS YELFGDAVVF DTTHRLSAVE MPLGIWVGVN 301: NYGVPCFFGC VLLRDENLRS WSWALQAFTG FMNGKAPQTI LTDHNMCLKE AIAGEMPATK HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV 401: EEFELGWRDM VNSFGLHTNR HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVVVD FKDQATEQQT MQQNLQNISL 501: KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDEG YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL 601: RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR EQPVSSLAIR DISSSVQRNF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)