AT5G03450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03750.1); Has 6680 Blast hits to 3674 proteins in 290 species: Archae - 4; Bacteria - 114; Metazoa - 3367; Fungi - 525; Plants - 736; Viruses - 186; Other Eukaryotes - 1748 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:858954..862238 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69872.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||
| Length | 630 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPRRSYPFS GHGGTIARFI EFGEAFGHYG EEEDEEEEDE EEAYVDYGEV QEEDEEEEEE EDSERQTREY IDVLDSPVRV SQNESEGIEN QNRSQGVCSS 101: SSGSQEDVEW KQGDTEGLSC SICMEVWTSG GQHQVCCLPC GHLYGYSCIN KWFQQRRSGG KCPLCNKICS LRDVRKIYAS RVAAVDDEAH KRILFLEAKL 201: RSIEQKTASW SNKEVQWKIT EAELRLEVTK LKKKIANMES TTKGSQSQSN VASQEKYIPA HNIYQEHHGQ SPSCSFRHQG DLLINGGRIF DIDGGRQILL 301: YARRLSGVGG TFVLTQMSLH SPCEIDDILL PRTTRAIKDL HLSPHNNGLA VFGSLGKKLS VISLESHNTV LSYDLPAAPW SCSWDLKSSH HIYAGLQNGM 401: VLIFDMRQTT GPFASMTGLT TNPVHTVHHL SGNSTPTSDV RTLLSASSIG LCQWNISGSE GSPSLVSETG NPGVCISSSY CPRSNHIVAS YRPRVGSSDD 501: TVPTQPSLTQ TGVSNSNSNG VDGFHVCHKR RGVDSYYQKL SSTQAIVDPI RLPRTAIIDF GGERKQLFAS CDESTRELIL QDPSTFTISQ RLPLSSHLPL 601: QDVKYCHVNG SDLLGLLTDD RLQILRNESP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)