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AT1G20670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding bromodomain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding bromodomain-containing protein; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2); Has 11096 Blast hits to 8233 proteins in 323 species: Archae - 0; Bacteria - 121; Metazoa - 4363; Fungi - 1457; Plants - 677; Viruses - 7; Other Eukaryotes - 4471 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:ENOG410IUKVEMBL:AC069251EMBL:BT046188
EMBL:CP002684EnsemblPlants:AT1G20670EnsemblPlants:AT1G20670.1entrez:838655
Gene3D:1.20.920.10GeneID:838655GO:GO:0003677Gramene:AT1G20670.1
hmmpanther:PTHR22881hmmpanther:PTHR22881:SF16HOGENOM:HOG000253968InterPro:IPR001487
InterPro:IPR018359KEGG:ath:AT1G20670KO:K11723ncoils:Coil
OMA:GEVADTMPfam:PF00439Pfscan:PS50014PhylomeDB:Q9LM88
PRINTS:PR00503PRO:PR:Q9LM88PROSITE:PS00633PROSITE:PS50014
Proteomes:UP000006548RefSeq:NP_173490.1scanprosite:PS00633SMART:SM00297
SMR:Q9LM88STRING:3702.AT1G20670.1SUPFAM:SSF47370TAIR:AT1G20670
UniGene:At.41698UniProt:Q9LM88
Coordinates (TAIR10) chr1:-:7164537..7167933
Molecular Weight (calculated) 72959.90 Da
IEP (calculated) 6.86
GRAVY (calculated) -1.07
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEVADTMTK KKKKGRPSLL DLQKRAIKQQ QQQLQQQQQQ HKNNHQDDDD HHHNNNNRSG SKNPNSLNHR SKRRNPNSND GDSPWIKDEG EDNDDDERRE
101: KKHKLLHGLN SHSHRHSPNS QSDLNLDQTP EPSFNRRNLS AAASGSDYHT GEKASKATDI LQGSPVESGP TTPLPDKKLL LFILDRLQKK DTYGVYSDPV
201: DPEELPDYFE IIKNPMDFST LRNKLDSGAY STLEQFERDV FLICTNAMEY NSADTVYYRQ ARAIQELAKK DFENLRQDSD DEEPQSQQQQ QQQPKVARRG
301: RPPKKHPEPS SIDRTASEIS ADALIPGDSS NKFSGAYNLR KAPPSYKFRQ AESSVRINHN SETQSGWSVD WESEFPSSVV KAVNKYGMKH FNVDDNRRDT
401: YNHLSTSTQE PSVLTTLEDE LKQLIPVGLN MEYGYAKSLA RYAANLGPVA WKIASRRIET VLPSGIKFGQ GWVGENPAGP EEDDSQKQNI LMSSGKQKCS
501: NDLASDDHSN RILSPTASVS SAFIGNRHAS SQAIEETTPP PARVLNPEID HPSSSSHQAG LLIKTESSNG LIRGFNHNAN QMLGIARQQQ PNVSNEATPV
601: SQQQGSLFPY PKQEFHRFPP DLNARLVSPN SPGSNQQTGS SSSQHPDLAL QL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)