AT1G11480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:3864368..3866750 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 64059.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.46 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKKKSAAMT LKDFHGGSIP SDLPLPSAPG VTPKVIPDRP VFDRAPWGNS IGRPDQRARP SSSHAIRNLD DKSLFLPHNV NIGRNFSEDE RKPLDGHSAP 101: RRVVSDDVFR FANNRLEMKA DSVLAGRHSG WAAGPLTHSG TGNIENSVSG NHSNIWNGRK EVSVANNEPG QSPWTKQPAV SNLVHTSALD QVSSGGWQSK 201: LLVPSQMGFD VVKHSEIDTR VYKTNSPVIS QGVEPHGTHV ERALIAEDGI QRGKKLSREY EKIPGPTYVD AKEAKIVANT NDKPHPKYSD VKPAGHLVQP 301: TAPSEVVERP KLNLLPRTKP LESVEKPVND EKLENSASVL IQRENATQKS FNNSKSGLST DEIPNQPAER PKLNLKPVAQ LLEQPEVKTE KDRSAVFGGA 401: RPRELVLKER GIDEPEHHKL DQPTDRMVLK PIERVPEHAS QRPVSSPRDM RTRKFDQKDG RNVSDIARSE TQRRNWRENE NKSARQQQQT QEKTRHPSPE 501: TWRKPVPQKL DSPNGTGIRH GKAASALELA QAYSPFSDPK SGIGSSNSFN KSRNNQTQQQ PFSRLVGSTT TGRQINGY |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)