AT3G12570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FYD | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FYD; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT2G37570.1); Has 108 Blast hits to 106 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3989407..3990876 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55279.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.47 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||
| Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGETLITTLS MENYHPSTLL SMDSGAFTHE ESERDMNGSL ILTGPPDINL PLSSEARPSL LLWNEHCDIL DVGLGPQLYE PEAVVHVPKV AKKYNKRVDS 101: AWGAWLFFSF YFKPVLDEKS KSKLTRDSNG LSGYDKSDLQ LDSFLVQHDM ENMYMWVFKE KPENALGKMQ LRSYMNGHSR EGERPFPFSV DKGFVRSHRM 201: QRKHYRGLSN PQCLHGIEVV YSPNLSVLSE DEKKKWTELT GRDVNFAIPA EASDYGSWRN LPNTEFEAER PLPLAKANGH THLKKLNGTC LNLSTHSPDH 301: AVDTVEVQLA GSNKRKRDCL ALGNCDDSSS SEKSLDMKIH ATELPWSNDF SGVMKNVYGP VTAAKTIYED DRGFLIVMSL PFVDSGRVKV TWRNTPAHGI 401: VKISCVSTAC EPFIKRHDRT FKLTDPTPEH CPPGEFVREV SLPNRIPDDA KLEAYRDETG TTLEVLVPKH RMGPEEHEVR VCLRPFVLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)