suba logo
AT5G21040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.934
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box protein 2
Curator
Summary (TAIR10)
Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.
Computational
Description (TAIR10)
F-box protein 2 (FBX2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17503eggNOG:ENOG410IQCSeggNOG:ENOG4111FAIEMBL:AF296834
EMBL:AY048254EMBL:BT002693EMBL:CP002688EnsemblPlants:AT5G21040
EnsemblPlants:AT5G21040.1EnsemblPlants:AT5G21040.2entrez:832228Gene3D:2.130.10.10
GeneID:832228Genevisible:Q94AD8GO:GO:0016036Gramene:AT5G21040.1
Gramene:AT5G21040.2hmmpanther:PTHR22844hmmpanther:PTHR22844:SF160HOGENOM:HOG000030534
InParanoid:Q94AD8InterPro:IPR001680InterPro:IPR001810InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G21040
OMA:WEHEGPIPaxDb:Q94AD8Pfam:PF00400Pfam:PF00646
Pfam:Q94AD8Pfscan:PS50082Pfscan:PS50181Pfscan:PS50294
PhylomeDB:Q94AD8PRIDE:Q94AD8PRINTS:PR00320PRO:PR:Q94AD8
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50181PROSITE:PS50294
ProteinModelPortal:Q94AD8Proteomes:UP000006548RefSeq:NP_001190352.1RefSeq:NP_568408.1
scanprosite:PS00678SMART:SM00256SMART:SM00320SMR:Q94AD8
STRING:3702.AT5G21040.1SUPFAM:SSF50978SUPFAM:SSF81383TAIR:AT5G21040
tair10-symbols:FBX2UniGene:At.26192UniProt:Q94AD8
Coordinates (TAIR10) chr5:-:7145058..7146677
Molecular Weight (calculated) 60558.20 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.34
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFECQERLE AANDQRSESG LLNTDLRIGN DGSVEIPNVK LCCQKKKGTL VPSGSKQLLS DKDLSTTIID LPQALISEIL NCLDPKELGL VSCVSTYLHR
101: LASEHHAWKE FYRERWGLPV VFGAASSGLS DERSWKDLFV EREFRSRTFL GRYSIDTLYG HTEAVRTVFL LASAKLVFTS GYDSIVRMWD MEEGLSIAAS
201: KPLGCTIRAL AADTKLLVAG GTDGFIHCWK SLDGLRNLFD LTGFQKEKTE FRLWGHEGPI TSLALDMTSI FSGSWDMSVR IWDRSSMKCV KTLRHSDWVW
301: GLAPHETTLA STSGSDVYIW DVSSETPLAI IPDAHEGTTY SLARSHTGDF LFTGGEDGGI KMFEIRRYGS ETSVVLISQW MPHTSPVYSL SFEFPWLVSA
401: SGDGKLALID VRKLLKTNRC AYSKRISSST VEPPQRMLHG FGSNLFSVDV GYDRIVCGGE EGTVRIWNFT QALEIERRTR ALKGMRHENR MRRRRMQMEM
501: NAKNGRPDQC SIAAHKNPIN GERNRAWHSK RRASGKAKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)