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AT5G54310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23771894 (2013): Golgi trans-Golgi network
  • PMID:21105926 (2010): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 5
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. Regulates membrane trafficking and organ separation.
Computational
Description (TAIR10)
ARF-GAP domain 5 (AGD5); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: floral organ abscission, activation of ARF GTPase activity; LOCATED IN: cytosol, trans-Golgi network, endosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 15 (TAIR:AT3G17660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0703EMBL:AB010695EMBL:FJ794601
EnsemblPlants:AT5G54310EnsemblPlants:AT5G54310.1entrez:835519ExpressionAtlas:C4NZX2
GeneID:835519GO:GO:0005096Gramene:AT5G54310.1hmmpanther:PTHR23180
hmmpanther:PTHR23180:SF160InterPro:IPR001164iPTMnet:C4NZX2KEGG:ath:AT5G54310
KO:K12486OMA:PVESKPQPaxDb:C4NZX2Pfam:PF01412
Pfam:Q9FL69Pfscan:PS50115PhylomeDB:C4NZX2PRIDE:C4NZX2
PRINTS:PR00405PROSITE:PS50115ProteinModelPortal:C4NZX2RefSeq:NP_568807.1
SMART:SM00105SMR:C4NZX2STRING:3702.AT5G54310.1SUPFAM:SSF57863
TAIR:AT5G54310tair10-symbols:AGD5tair10-symbols:NEVUniGene:At.20358
UniProt:C4NZX2UniProt:Q9FL69
Coordinates (TAIR10) chr5:-:22057262..22061066
Molecular Weight (calculated) 52595.50 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.72
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)