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AT5G18110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : novel cap-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
novel cap-binding protein (NCBP); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E (TAIR:AT4G18040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17205eggNOG:COG5053eggNOG:KOG1669EMBL:AB012246
EMBL:AF028809EMBL:AY092964EMBL:AY093208EMBL:AY114562
EMBL:CP002688EnsemblPlants:AT5G18110EnsemblPlants:AT5G18110.1entrez:831929
Gene3D:3.30.760.10GeneID:831929Genevisible:Q9FK59GO:GO:0003743
GO:GO:0005829GO:GO:0006417Gramene:AT5G18110.1hmmpanther:PTHR11960
hmmpanther:PTHR11960:SF18HOGENOM:HOG000186751InParanoid:Q9FK59IntAct:Q9FK59
InterPro:IPR001040InterPro:IPR019770InterPro:IPR023398KEGG:ath:AT5G18110
KO:K03259OMA:VGIKPMWPANTHER:PTHR11960PaxDb:Q9FK59
Pfam:PF01652Pfam:Q9FK59PhylomeDB:Q9FK59PIR:T52138
PRIDE:Q9FK59PRO:PR:Q9FK59PROSITE:PS00813ProteinModelPortal:Q9FK59
Proteomes:UP000006548RefSeq:NP_197312.1scanprosite:PS00813SMR:Q9FK59
STRING:3702.AT5G18110.1SUPFAM:SSF55418TAIR:AT5G18110tair10-symbols:NCBP
UniGene:At.49035UniGene:At.7547UniProt:Q9FK59
Coordinates (TAIR10) chr5:-:5989105..5990588
Molecular Weight (calculated) 25746.20 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.64
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)