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AT3G51530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.511
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1900 Blast hits to 1872 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1900; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTA3eggNOG:ENOG411081SEMBL:AK229740EMBL:AL133452
EMBL:BT022018EMBL:BT029216EMBL:CP002686EnsemblPlants:AT3G51530
EnsemblPlants:AT3G51530.1entrez:824316Gene3D:3.80.10.10GeneID:824316
Genevisible:Q501E9Gramene:AT3G51530.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000220924InParanoid:Q501E9InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G51530OMA:YLEMHTH
PaxDb:Q501E9Pfam:PF00646Pfam:PF07723Pfam:PF08387
Pfam:Q501E9Pfscan:PS50181PhylomeDB:Q501E9PIR:T45784
PRIDE:Q501E9PRO:PR:Q501E9PROSITE:PS50181ProteinModelPortal:Q501E9
Proteomes:UP000006548RefSeq:NP_190721.3SMART:SM00579SMR:Q501E9
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G51530UniGene:At.28717
UniGene:At.69872UniProt:Q501E9
Coordinates (TAIR10) chr3:-:19112873..19114497
Molecular Weight (calculated) 52754.00 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.23
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNSERFSAA KPLMEQGGKS SRKPGFMSED RISELPEVLL LQILSSLPTK LVISTSVLSK RWLSLWKMVQ RLEFESSRNI YDFAENVTRS LLSHKAPVLE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)