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AT4G10090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : elongator protein 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
elongator protein 6 (ELP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2348 (InterPro:IPR018627); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111K40eggNOG:KOG4723EMBL:AK227863EMBL:AK319007
EMBL:AL049487EMBL:AL161516EMBL:AY088150EMBL:BT024488
EMBL:CP002687EnsemblPlants:AT4G10090EnsemblPlants:AT4G10090.1entrez:826600
GeneID:826600Genevisible:Q8L9Y2GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0006355GO:GO:0006979GO:GO:0008284
GO:GO:0016746GO:GO:0031538GO:GO:0033588GO:GO:2000024
Gramene:AT4G10090.1hmmpanther:PTHR16184hmmpanther:PTHR16184:SF6HOGENOM:HOG000006207
InParanoid:Q8L9Y2InterPro:IPR018627KEGG:ath:AT4G10090OMA:RPFSHYD
PaxDb:Q8L9Y2Pfam:PF09807Pfam:Q8L9Y2PhylomeDB:Q8L9Y2
PIR:T04059PRIDE:Q8L9Y2PRO:PR:Q8L9Y2ProteinModelPortal:Q8L9Y2
Proteomes:UP000006548RefSeq:NP_567351.1STRING:3702.AT4G10090.1TAIR:AT4G10090
tair10-symbols:ELP6UniGene:At.33653UniProt:Q8L9Y2
Coordinates (TAIR10) chr4:+:6305455..6307286
Molecular Weight (calculated) 29127.10 Da
IEP (calculated) 6.08
GRAVY (calculated) 0.00
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRSLNLLDL ALGFDEQLAI PSPLNGKVIL IEDCVETSGS FVLHQLMKRV LSSNSSDALI FLAFARPFSH YDRILRKLGC NLATHKSNNR LVFFDMLMVK
101: CSDGDQMEDN VSAVAKLFRE IQETVRKLQS VTSGNITVMV DDMSLLEIAT TGSNSDHVLD FLHYCHTLSS ESNCSLVILN HEDIYASMER PAFLLQMVCL
201: ADVVIKAEPL ASGLANDVHG QLTVLNKGIS NSGRGSSRNK LQNFQFRIKE NGIDYFYPGC RS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)