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AT3G25940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TFIIB zinc-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20065.1); Has 975 Blast hits to 975 proteins in 277 species: Archae - 178; Bacteria - 0; Metazoa - 339; Fungi - 204; Plants - 110; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1594eggNOG:KOG2907EMBL:AB023041EMBL:AY084292
EMBL:BT024567EMBL:CP002686EnsemblPlants:AT3G25940EnsemblPlants:AT3G25940.1
entrez:822191GeneID:822191GO:GO:0003676GO:GO:0003899
GO:GO:0005730GO:GO:0006351GO:GO:0008270Gramene:AT3G25940.1
hmmpanther:PTHR11239hmmpanther:PTHR11239:SF14HOGENOM:HOG000228133IntAct:Q9LU97
InterPro:IPR001222InterPro:IPR012164KEGG:ath:AT3G25940KO:K03000
OMA:CKTTRNAPfam:PF01096Pfscan:PS51133PhylomeDB:Q9LU97
PIRSF:PIRSF005586PROSITE:PS00466PROSITE:PS51133Proteomes:UP000006548
RefSeq:NP_566786.1scanprosite:PS00466SMART:SM00440SMR:Q9LU97
STRING:3702.AT3G25940.1SUPFAM:SSF57783TAIR:AT3G25940UniGene:At.37301
UniProt:Q9LU97
Coordinates (TAIR10) chr3:+:9495104..9495942
Molecular Weight (calculated) 13580.10 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.66
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSRESEFL FCNLCGTMLV LKSTKYAECP HCKTTRNAKD IIDKEIAYTV SAEDIRRELG ISLFGEKTQA EAELPKIKKA CEKCQHPELV YTTRQTRSAD
101: EGQTTYYTCP NCAHRFTEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)