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AT3G59600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA polymerase Rpb8
Curator
Summary (TAIR10)
One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast RPB8. Probably redundant with At1g54250.
Computational
Description (TAIR10)
NRPB8B; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb8 (TAIR:AT1G54250.1); Has 513 Blast hits to 511 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
BioGrid:10443eggNOG:ENOG4111FT0eggNOG:KOG3400EMBL:AK119016
EMBL:AL138659EMBL:AY086002EMBL:BT008531EMBL:CP002686
EnsemblPlants:AT3G59600EnsemblPlants:AT3G59600.1entrez:825129Gene3D:2.40.50.140
GeneID:825129Genevisible:Q9M1A8GO:GO:0000418GO:GO:0000419
GO:GO:0005665GO:GO:0005666GO:GO:0005736GO:GO:0006360
GO:GO:0006366GO:GO:0006383Gramene:AT3G59600.1hmmpanther:PTHR10917
HOGENOM:HOG000175572InParanoid:Q9M1A8IntAct:Q9M1A8InterPro:IPR005570
InterPro:IPR012340KEGG:ath:AT3G59600KO:K03016OMA:SESFAME
PANTHER:PTHR10917PaxDb:Q9M1A8Pfam:PF03870Pfam:Q9M1A8
PhylomeDB:Q9M1A8PIR:T49301PIRSF:PIRSF000779PRIDE:Q9M1A8
PRO:PR:Q9M1A8ProteinModelPortal:Q9M1A8Proteomes:UP000006548Reactome:R-ATH-112382
Reactome:R-ATH-113418Reactome:R-ATH-1834949Reactome:R-ATH-674695Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163
Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_191519.1
SMART:SM00658SMR:Q9M1A8STRING:3702.AT3G59600.1SUPFAM:SSF50249
TAIR:AT3G59600tair10-symbols:NRPB8Btair10-symbols:NRPD8Btair10-symbols:NRPE8B
UniGene:At.34608UniProt:Q9M1A8
Coordinates (TAIR10) chr3:+:22016629..22017923
Molecular Weight (calculated) 16604.30 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.19
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNIIMFED IFVVDKLDPD GKKFDKVTRV EARSHNLEMF MHLDVNTEVY PLAVGDKFTL AMAPTLNLDG TPDTGYFTPG AKKTLADKYE YIMHGKLYKI
101: SERDGKTPKA ELYVSFGGLL MLLQGDPAHI SHFELDQRLF LLMRKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)