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AT3G50880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.2); Has 4313 Blast hits to 4311 proteins in 953 species: Archae - 62; Bacteria - 2052; Metazoa - 1; Fungi - 144; Plants - 80; Viruses - 0; Other Eukaryotes - 1974 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50880-MONOMEREC:3.2.2.20eggNOG:COG0122eggNOG:KOG1918
EMBL:AK119087EMBL:AL049862EMBL:BT005275EMBL:CP002686
EnsemblPlants:AT3G50880EnsemblPlants:AT3G50880.1entrez:824252Gene3D:1.10.1670.10
Gene3D:1.10.340.30GeneID:824252GO:GO:0006284GO:GO:0008725
Gramene:AT3G50880.1hmmpanther:PTHR10242hmmpanther:PTHR10242:SF0HOGENOM:HOG000261908
InterPro:IPR003265InterPro:IPR011257InterPro:IPR023170KEGG:ath:AT3G50880
KO:K01247OMA:NNGVLSDPfam:PF00730PhylomeDB:Q9SVL1
PIR:T08409ProMEX:Q9SVL1Proteomes:UP000006548RefSeq:NP_190657.1
SMART:SM00478SMR:Q9SVL1STRING:3702.AT3G50880.1SUPFAM:SSF48150
TAIR:AT3G50880UniGene:At.35446UniProt:Q9SVL1
Coordinates (TAIR10) chr3:+:18913509..18914330
Molecular Weight (calculated) 30293.90 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.12
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLRKTLTAV NQSSLPPDSL ISAGNLTVSE VSGSSSRIRF RPRKIRKVSS DPSPRIIITA SPPLSTKSTV DIALRHLQSS DELLGALITT HNDPPLFDSS
101: NTPFLSLARS ILYQQLATKA AKCIYDRFIS LFNGGEAGVV PESVISLSAV DLRKIGVSGR KASYLHDLAD KYNNGVLSDE LILKMSDEEL IDRLTLVKGI
201: GVWTVHMFMI FSLHRPDVLP VGDLGVRKGV KDLYGLKNLP GPLQMEQLCE KWRPYRSVGS WYMWRLIESR KTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)