AT3G50880.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.985 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNA glycosylase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.2); Has 4313 Blast hits to 4311 proteins in 953 species: Archae - 62; Bacteria - 2052; Metazoa - 1; Fungi - 144; Plants - 80; Viruses - 0; Other Eukaryotes - 1974 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:18913509..18914330 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 30293.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||
Length | 273 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLRKTLTAV NQSSLPPDSL ISAGNLTVSE VSGSSSRIRF RPRKIRKVSS DPSPRIIITA SPPLSTKSTV DIALRHLQSS DELLGALITT HNDPPLFDSS 101: NTPFLSLARS ILYQQLATKA AKCIYDRFIS LFNGGEAGVV PESVISLSAV DLRKIGVSGR KASYLHDLAD KYNNGVLSDE LILKMSDEEL IDRLTLVKGI 201: GVWTVHMFMI FSLHRPDVLP VGDLGVRKGV KDLYGLKNLP GPLQMEQLCE KWRPYRSVGS WYMWRLIESR KTK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)