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AT3G13445.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TATA binding protein 1
Curator
Summary (TAIR10)
TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex
Computational
Description (TAIR10)
TATA binding protein 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 2 (TAIR:AT1G55520.2); Has 2082 Blast hits to 1578 proteins in 405 species: Archae - 722; Bacteria - 0; Metazoa - 573; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
Protein Annotations
BioGrid:5880eggNOG:COG2101eggNOG:KOG3302EMBL:AB493611
EMBL:AF324696EMBL:AF327429EMBL:AF349523EMBL:AP000603
EMBL:AY054608EMBL:AY072455EMBL:AY084881EMBL:AY463625
EMBL:CP002686EMBL:X54996EnsemblPlants:AT3G13445EnsemblPlants:AT3G13445.1
entrez:820546EvolutionaryTrace:P28147ExpressionAtlas:P28147Gene3D:3.30.310.10
GeneID:820546Genevisible:P28147GO:GO:0003677GO:GO:0005634
GO:GO:0006352GO:GO:0006355HAMAP:MF_00408HOGENOM:HOG000105162
InParanoid:P28147IntAct:P28147InterPro:IPR000814InterPro:IPR012295
InterPro:IPR030491MINT:MINT-1508178OMA:MDCLEAIPaxDb:P28147
PDB:1QN3PDB:1QN4PDB:1QN5PDB:1QN6
PDB:1QN7PDB:1QN8PDB:1QN9PDB:1QNA
PDB:1QNBPDB:1QNCPDB:1QNEPDB:1VOK
PDB:1VOLPDB:1VTLPDB:1VTOPDBsum:1QN3
PDBsum:1QN4PDBsum:1QN5PDBsum:1QN6PDBsum:1QN7
PDBsum:1QN8PDBsum:1QN9PDBsum:1QNAPDBsum:1QNB
PDBsum:1QNCPDBsum:1QNEPDBsum:1VOKPDBsum:1VOL
PDBsum:1VTLPDBsum:1VTOPfam:P28147Pfam:PF00352
PhylomeDB:P28147PIR:S10946PRIDE:P28147PRINTS:PR00686
PRO:PR:P28147PROSITE:PS00351ProteinModelPortal:P28147Proteomes:UP000006548
Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042RefSeq:NP_187953.1scanprosite:PS00351SMR:P28147
STRING:3702.AT3G13445.1SUPFAM:SSF55945TAIR:AT3G13445tair10-symbols:TBP1
tair10-symbols:TFIID-1UniGene:At.20074UniGene:At.24512UniProt:P28147
UniProt:Q53YT8
Coordinates (TAIR10) chr3:+:4380317..4381869
Molecular Weight (calculated) 22369.60 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.04
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)