AT3G20070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : titan9 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TITAN9 (TTN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, endosperm development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 250 Blast hits to 217 proteins in 63 species: Archae - 0; Bacteria - 52; Metazoa - 53; Fungi - 8; Plants - 43; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7004950..7006625 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32467.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEALYAKLYD KYTKLQKKKY SEYDEINKEQ EEKFLTFVSA SEELMEHLRG ENQSSLEMVE KLRNEIISIR SGRDDKFLEC QKLLMEEELK NKSLSEEVVK 101: LKELVQEEHP RNYEDQSGKK QKRKTPESAR VTTRSMIKRS RLSEDLVETD MVSPDISKHH KAKEPLLVSQ PQCCRTTYDG SSSSASCTFQ ALGKHLLGMK 201: LSTNNKGKRA CIVASHPTTG LSFSLTFINN PNGEESELLY KPASLGTFQR VAPEWMREVI KFSTSMCPIF FERVSRVIKL NC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)