AT5G18440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6113092..6115748 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53648.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRPPYNSFQP QARPYRPQHQ LQQQQQINGF SNHQQQQHNG YQNPMNANQL GMMNPQMMNN PMMGHNMPMP NMPIHPQFFN NMPQQLPQFA MPNHINQLLP 101: NLLGNLQFAV ANSNLMGHSL PNFFQPSLEP HAFSSRPQLN SFNSLPYPPV PNPHQNHQSG PPGFSEPRPQ GQSVDNTNGS GPNGNDFRNK FPKHQNFKGP 201: GQGFQRPQLH QADNGKRKSG FNKDHRGKGN NNKMKTGLDG SDTGNIAKEK KRSYALMYTP REVQQWREAR RKNYPTKFLV EKKVKKNVSA SILDEEAKMR 301: RQQLREVLAK QAELGVEVAE VPSHYLSNND EQVNGDRGNN NGRKGRFQNN RRNKRRHDRK DKFDNKKPRL EDKKSSQDSS ITTRKPTLLE KLLSADIKRD 401: KSQLLQVFRF MVMNSLLKEF PEQPLKLPLI TVKETGCEDA MEDPSIEGLC DGLSDGDDVD GDDSSCDEDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)