AT5G35910.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT1G54440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:14029871..14035405 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 97894.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 870 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSDGNMDVDE SPVSWKVKSL EKLIDGSSFS STLSRLSSSS RLIPTSRDFH FYYNFDEFKR PIDEITGTSQ STLATIGDSE QVWGKSMKFP GDVDDVYAED 101: WLCNVNDELI ERFDVSVDEF QRIRKKEKEI GRSVVADDGD DGFQMVYGKK KKPVGNVVTG SAAVNGGGSV IDVKMAERDK NSSGKAKVPF HVPTIKKPQE 201: EYNILVNNAN LPFEHVWLER SEDDLRAMHP LEKFSVLDFV DKDVNEMEPV KPLPLEQTPF KFVQEVKDLK ELVAKLRSVE EFAVDLEHNQ YRSFQGLTCL 301: MQISTRTEDY IVDTFKLRIH IGPYLREIFK DPKKKKVMHG ADRDIIWLQR DFGIYVCNLF DTGQASRVLN LERNSLEFLL QHFCGVTANK EYQNADWRIR 401: PLPEEMTRYA REDTHYLLYI YDLIKLELQR MAKDDAHTDS PLLEVYKRSY DVCTQLYEKE LLTENSYLHV YGLQAAGFNA AQLAIVAGLC EWRDFIARAE 501: DESTGYVLPN KVLLEIAKEM PDSVGKLRRM LKSKHPYIER NVDSVVSVIR QSMQHYAAFE SAALSLKDVS PGNVMDKNIE PISEKKDLHT GDVASPSLKE 601: NSSQLESTRD LIMGAANTNE GRGLGSGLFG SAKVSAAVRI SKKPSSGLGA LLGNAASKKK SRTDEKVKED VKLEQIRSSV NLSFHSFTEK VPDSKSTSET 701: SPKVYGKPEE MSSTMPASVS KEDGVKELKD DSEEASEIVG TSGRVSESKV SSSEMGDIIL LENGDEKKVD AEDEPMSLSE LSTNFQKCFK SMNKSKKAQK 801: QTEFLNIEPF DYEAARKEVK FGEGHKGRQG KREAAAGQKK GSTQEQSEFG QGKRRQAFPA SGNRSMSFKN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)