AT4G24270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : EMBRYO DEFECTIVE 140 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12581765..12587293 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92776.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 816 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMADDTELVS NTDQKMEDAS AENPARADPP SSDDSGDSDS DSEDEAESNQ QIVTLESELS ANPYNYDAYV QYIKLLRKTA NLEKLRQARE AMSAIFPLSP 101: SLWLEWARDE ASLAASENVP EIVMLYERGL SDYQSVSLWC DYLSFMLEFD PSVRGYPSEG ISKMRSLFER AIPAAGFHVT EGNRIWEGYR EFEQGVLATI 201: DEADIEERNK QIQRIRSIFH RHLSVPLENL SSTLIAYKTW ELEQGIDLDI GSDDLSKVSH QVAVANKKAQ QMYSERAHLE ENISKQDLSD TEKFQEFMNY 301: IKFEKTSGDP TRVQAIYERA VAEYPVSSDL WIDYTVYLDK TLKVGKAITH AYSRATRSCP WTGDLWARYL LALERGSASE KEIYDVFEKS LQCTFSSFEE 401: YLDLYLTRVD GLRRRMLSTR MLEALDYSLI RETFQQASDY LTPHMQNTDS LLHLHTYWAN LELNIGKDLA GARGVWDSFL KKSGGMLAAW HAYIDMEVHL 501: GHIKEARSIY RRCYTRKFDG TGSEDICKGW LRFEREHGDL EHFDLAVQKV MPRLEELQLM RLQQESTPVK PSAGLKEHSS QKRKAEQNVE EESLAKRQKR 601: KSQKEVDLGG QSATVPATKN VKAENGKTAD SDKEETEDAK PLKPKVYRDE CTAFISNLSV KAQEEDIRKF FGDDGGVDSI RILHHKDTGK PRGLAYADFV 701: DDEHLAAAIA KNRKMFFGKK ISIARSNPKK GKKEFTRRGN DGSGNSKDPS LISEKAKAPL GGETEGERKG NEVEVRGKNT FAVPRNVKPL GYTTPKPSAD 801: ETPKSNDEFR NMFLKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)