suba logo
AT5G63630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G08610.1); Has 41050 Blast hits to 40248 proteins in 2998 species: Archae - 715; Bacteria - 20319; Metazoa - 6002; Fungi - 4604; Plants - 2553; Viruses - 10; Other Eukaryotes - 6847 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1555-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0342
EMBL:AB005234EMBL:AJ010477EMBL:CP002688EnsemblPlants:AT5G63630
EnsemblPlants:AT5G63630.1entrez:836483Gene3D:3.40.50.300GeneID:836483
Genevisible:Q9FFQ1GO:GO:0003723GO:GO:0004386GO:GO:0005524
Gramene:AT5G63630.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF265HOGENOM:HOG000268799
InParanoid:Q9FFQ1InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9FFQ1KEGG:ath:AT5G63630
PaxDb:Q9FFQ1Pfam:PF00270Pfam:PF00271Pfam:Q9FFQ1
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9FFQ1
PIR:T51350PRIDE:Q9FFQ1PRO:PR:Q9FFQ1PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9FFQ1Proteomes:UP000006548
RefSeq:NP_201168.2SMART:SM00487SMART:SM00490SMR:Q9FFQ1
STRING:3702.AT5G63630.1SUPFAM:SSF52540TAIR:AT5G63630UniGene:At.28989
UniProt:Q9FFQ1
Coordinates (TAIR10) chr5:-:25472598..25476402
Molecular Weight (calculated) 89631.70 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.49
Length 788 amino acids
Sequence (TAIR10)
(BLAST)
001: MWMMVSMETM IPCLLFCHFM KVLWDASKFL ASINGRWFWF LLGVNDKEEE AKSMNNFSGH RQRRNSVIVS KVMPLNFPLR IRFFAHSLSG THLSYNTSSS
101: VPLLFRIFSS GLNHFEFGSR INFSTRPNRD QPEFERRIRD GGEIRASKSL IEDEEELSNW VSGFRTGSSR GILKSDDEDE EDRSRGRNQE KRGIRNQVDS
201: FRNKRYGGDR ERGFNSRIQG KSSEASFRGR KETSFSRDRE DEKGLRKRED LRLEDESSDE DVKSLVMGDI GDLLSEDDEE EDQDYDFLKK KAVSAFGFDK
301: ENVIEADKTR NANDSYLTKT RFDHYPLSPL SLKAIKDAGY ETMTVVQEAT LPIILKGKDV LAKAKTGTGK TVAFLLPSIE VVVKSPPTSP DNKRPPILAL
401: VICPTRELAN QAATEANTLL KYHPSIGVQV VIGGTRLGLE QKRMQTNPCQ ILVATPGRLK DHIENTPGFA TRLKGVKVLV LDEADHLLDM GFRKDIERII
501: SAVPKERQTF LFSATVPEEV RQICLVALRR DHEFVNCVHE GTIETHQQVR QMHMIASLDR HFSLLYTLLR EHIMGNVDYK VIVFCTTAMV TKLVADLLGE
601: LNLNVREIHS RKPQSYRTRV SNEFRKSKGL ILVTSDVSAR GVDYPDVTLV LQVGLPKDRE QYIHRLGRTG RKGKEGEGIL LLAPWEEYFL SSLKDLPITK
701: SPLPSIDPET VKKVQKALCH VEMRNKEAAY QAWLGYYNSQ KMIGRDKDRL VELANEFSRS MGLDNPPAIP KLILGKMGLK NVPGLRAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)