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AT4G04670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.756
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Met-10+ like family protein / kelch repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Met-10+ like family protein / kelch repeat-containing protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Protein of unknown function Met10 (InterPro:IPR003402), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915), tRNA wybutosine-synthesizing protein (InterPro:IPR003827); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G18610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.282EC:2.5.1.114eggNOG:COG1590eggNOG:COG2520
eggNOG:KOG0379eggNOG:KOG1227eggNOG:KOG1228EMBL:AF149414
EMBL:AL161501EMBL:AY062510EMBL:BT008367EMBL:CP002687
EnsemblPlants:AT4G04670EnsemblPlants:AT4G04670.1entrez:825800Gene3D:2.120.10.80
Gene3D:3.30.1960.10Gene3D:3.40.50.150GeneID:825800Genevisible:Q8W4K1
GO:GO:0008168GO:GO:0031591Gramene:AT4G04670.1hmmpanther:PTHR23245
hmmpanther:PTHR23245:SF31HOGENOM:HOG000030795InParanoid:Q8W4K1InterPro:IPR003827
InterPro:IPR006652InterPro:IPR015915InterPro:IPR029063InterPro:IPR030382
KEGG:ath:AT4G04670KO:K15450OMA:HVADRCIPaxDb:Q8W4K1
Pfam:PF01344Pfam:PF02475Pfam:PF02676Pfam:PF13415
Pfam:PF13418Pfam:Q8W4K1Pfscan:PS51684PhylomeDB:Q8W4K1
PIR:H85058PRIDE:Q8W4K1PRO:PR:Q8W4K1PROSITE:PS51684
ProteinModelPortal:Q8W4K1Proteomes:UP000006548RefSeq:NP_567268.2SMR:Q8W4K1
STRING:3702.AT4G04670.1SUPFAM:0044041SUPFAM:0052715SUPFAM:SSF111278
SUPFAM:SSF53335TAIR:AT4G04670UniGene:At.27318UniPathway:UPA00375
UniProt:Q8W4K1
Coordinates (TAIR10) chr4:+:2367603..2371990
Molecular Weight (calculated) 110862.00 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.28
Length 995 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFEKRKAAT LASIRSSVTD KSPKGFLDEP IIPLLETINH HPSYFTTSSC SGRISILSQP KPKSNDSTKK KARGGSWLYI THDPADSDLV ISLLFPSKSN
101: QIDPIDQPSE LVFRFEPLII AVECKDLGSA QFLVALAISA GFRESGITSC GDGKRVIIAI RCSIRMEVPI GDTEKLMVSP EYVKFLVDIA NEKMDANRKR
201: TDGFSVALAS NGFKNPDEND VDEDDNYENL AANHDSSINN GNLYPGVQKE LIPLEKLSIV GEPVEKLHLW GHSACTIDES DRKEVIVFGG FGGFGRHARR
301: NESLLLNPSC GTLKLIAVNE SPSARLGHTA SMVGDFMFVI GGRADPLNIL NDVWRLDIST GEWSSQRCVG SEFPPRHRHA AASVGTKVYI FGGLYNDKIV
401: SSMHILDTKD LQWKEVEQQG QWPCARHSHA MVAYGSQSFM FGGYNGENVL NDLYSFDVQS CSWKLEVISG KWPHARFSHS MFVYKHTIGI IGGCPVSQNC
501: QELTLLDLKH RLWRSVRLEF MNKELFVRST ASILGDDLIV IGGGAACYAF GTKFSEPVKI NLVQSVTMSE NHLPPQPEDV SLESNKNNAD LKTETSLSQP
601: WVIQLERKYA KFGKDILKSF GWLDLERKVY SNEKGLCICF PVTENFSELF HEKQLLGKDF ERSEENNLTK GLSLKDISCS AALNLLKEHG AKKLINVAFE
701: AKKVAKSPLQ RMREDITSIL KQKGLPEELL DELPQKWERL GDIVVVPATS FKDPTWSSIN DEVWCAVSKS LSANRLARQG RVEPNGTRDS TLEILVGDNG
801: WVNHRENGIL YSFDATKCMF SWGNLSEKLR MGNMACENEV VVDLFAGIGY FVLPFLVRAK AKLVYACEWN PHAIEALRRN VEANSVSERC IILEGDNRIT
901: APKGVADRVN LGLIPSSEGS WVTAIQALRP EGGILHVHGN VKDSDESSWG EHVTKTLSDI ARAEGRSWEV TVEHIEKVKW YAPRIRHLVA DVRCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)