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AT1G65080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain; FUNCTIONS IN: binding; INVOLVED IN: protein insertion into membrane; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (TAIR:AT3G44370.1); Has 1367 Blast hits to 1362 proteins in 525 species: Archae - 4; Bacteria - 825; Metazoa - 205; Fungi - 148; Plants - 104; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0706eggNOG:KOG1239EMBL:AC009360EMBL:AY140011
EMBL:CP002684EnsemblPlants:AT1G65080EnsemblPlants:AT1G65080.1entrez:842816
Gene3D:1.25.40.10GeneID:842816Genevisible:Q8L718GO:GO:0009535
GO:GO:0016021GO:GO:0051205Gramene:AT1G65080.1hmmpanther:PTHR12428
hmmpanther:PTHR12428:SF22HOGENOM:HOG000033893InParanoid:Q8L718InterPro:IPR001708
InterPro:IPR011990InterPro:IPR013026KEGG:ath:AT1G65080OMA:CPSFLWF
PANTHER:PTHR12428PaxDb:Q8L718Pfam:PF02096Pfam:PF13181
Pfam:Q8L718Pfscan:PS50293PhylomeDB:Q8L718PIR:F96674
PRIDE:Q8L718PRO:PR:Q8L718PROSITE:PS50293ProteinModelPortal:Q8L718
Proteomes:UP000006548RefSeq:NP_176688.3STRING:3702.AT1G65080.1SUPFAM:SSF48452
TAIR:AT1G65080TMHMM:TMhelixUniGene:At.35924UniGene:At.35926
UniProt:Q8L718
Coordinates (TAIR10) chr1:+:24176619..24180729
Molecular Weight (calculated) 58289.80 Da
IEP (calculated) 6.35
GRAVY (calculated) 0.08
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVWRSCLRA SSSRHRLSSL FFSHHLKPSS FISHSPPLFS PSPSPSPTCF SPLHRLLSSG PEFPIGSQEI IPTDDSSLPV LAVVDFLEGF HEFTGLPWWM
101: IIASSTVAVR LALLPLLILQ LKKLKTISEL LPKLPMPIPE TPTLKGSIDQ FSHFLKESRA IGCPSFLWFF PYLSVQLPCF FLLMASIRKM SLDGHPGFDS
201: GGVLWFQNLS DLPGGSFGPV FPILIATFHY INIQISFDTS TIRQTTGLTG LLMRYYKLYL EILSVPLFFV GYAIPQGSLV YWVTNSSVNI FQQLSLKHPT
301: VGAKLGLLSQ GATPGMGHSM EISESVIKYV DSDSKEQTLS LQTLTPEELL SLSVQVLSKG DKETSIQLLR LALEKDPGYV RGLVLMGQAL LQKTQLSEAT
401: EYLELAISKL LDEDPSDAED VELLMLASQW AGAAYVQQGK LKSGIIHLER VAKLREPGDP KSKEHYFEAL LLLSSALYKE GQSDEAAKIL RVVVDHNPAY
501: KPLLEQCEDE NELVSDLVSR RKDHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)