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AT4G21520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.767
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 9857 Blast hits to 6114 proteins in 421 species: Archae - 34; Bacteria - 3288; Metazoa - 2459; Fungi - 1903; Plants - 847; Viruses - 0; Other Eukaryotes - 1326 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS4KeggNOG:KOG2919EMBL:AY142505EMBL:CP002687
EnsemblPlants:AT4G21520EnsemblPlants:AT4G21520.1entrez:828237Gene3D:2.130.10.10
GeneID:828237Gramene:AT4G21520.1hmmpanther:PTHR13211HOGENOM:HOG000030352
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT4G21520
OMA:YREDNMEPfam:PF00400Pfscan:PS50294PhylomeDB:Q8H1R6
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_193883.2SMART:SM00320
SMR:Q8H1R6STRING:3702.AT4G21520.1SUPFAM:SSF50978TAIR:AT4G21520
UniGene:At.32622UniProt:Q8H1R6
Coordinates (TAIR10) chr4:-:11447514..11450377
Molecular Weight (calculated) 47545.70 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.56
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEEAVAEE NGGLKVESGE QKSSWPTMRF DVSPYRTHHF SKQFRTARNP NNFLKGLKWS PDGSCFLASS EDNTLSLFHL PQDGGDSNGY GVPVPEEDSY
101: GASLLVNEGE SVYDFCWYPY MSVSDPLTCV FATSTRDHPI HLWDSTSGEL RCTYRAYDAM DEITAAFSVG FNPDGTKIFA GYNSSIRVFD LHRPGRDFRQ
201: YSTLQKNKEG QAGILSTLAF SPTNSGMLAV GSYGQTTGIY REDNMELLYV LHGQEGGVTH VQFSKDGNYL YTGGRKDPYI LCWDIRKSVE IVYKLYRATE
301: NTNQRVFFDI EPCGRHLGTG GQDGLVHMYD LQTGNWVSGY QAASDTVNAF SFHPYLPMAA TSSGHRRFAI PDDDDGEDKN ELQLKADENC VSLWSFYVED
401: NTYDENNGVA SESHLQNVTE EIVLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)