AT5G53080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21520624..21523158 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63113.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFSNSLLSS TTSLTTWANQ SSSQSSLSPR YSTWQCVCLR NQKRKPKLYL IPARHFLSTP IDSVSSSSIT ASRYATSGVS EVQRSTSSNN VTEMEEFEME 101: LQELFNEVKS MVKIGKESDA MDLLRANYVA VKEELDSGLK GIEQAAVLDI IALGYMAVGD LKPVPALLDM INKIVDNLKD SEPLLDSVLM HVGSMYSVIG 201: KFENAILVHQ RAIRILENRY GKCNTLLVTP LLGMAKSFAS DGKATKAIGV YERTLTILER NRGSESEDLV VPLFSLGKLL LKEGKAAEAE IPFTSIVNIY 301: KKIYGERDGR VGMAMCSLAN AKCSKGDANE AVDIYRNALR IIKDSNYMTI DNSILENMRI DLAELLHFVG RGDEGRELLE ECLLINERFK GKNHPSMATH 401: LINLAASYSR SKNYVEAERL LRTCLNIMEV SVGSEGQSIT FPMLNLAVTL SQLNRDEEAE QIALKVLRIR EKAFGEDSLP VGEALDCLVS IQARLGRDDG 501: EILGLLKRVM MIQEKEFGPS AQELIVTLQK IIHFLEKLEM KDDKFKFRRR LALLRERYKQ SLSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)