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AT2G31530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21051552 (2011): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SecY protein transport family protein
Curator
Summary (TAIR10)
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2289 (EMB2289); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SECY homolog 1 (TAIR:AT2G18710.1); Has 8827 Blast hits to 8825 proteins in 2687 species: Archae - 73; Bacteria - 5355; Metazoa - 4; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 3299 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0201eggNOG:ENOG410IIW8EMBL:AC007071EMBL:AY062590
EMBL:AY093354EMBL:BX820289EMBL:CP002685EnsemblPlants:AT2G31530
EnsemblPlants:AT2G31530.1entrez:817711Gene3D:1.10.3370.10GeneID:817711
Genevisible:F4IQV7GO:GO:0009526GO:GO:0009535GO:GO:0015031
GO:GO:0016021GO:GO:0031969GO:GO:0033097Gramene:AT2G31530.1
hmmpanther:PTHR10906hmmpanther:PTHR10906:SF2HOGENOM:HOG000241422InParanoid:F4IQV7
InterPro:IPR002208InterPro:IPR023201KEGG:ath:AT2G31530OMA:CGAMTMT
PANTHER:PTHR10906PaxDb:F4IQV7Pfam:F4IQV7Pfam:PF00344
PIR:H84721PRIDE:F4IQV7PRO:PR:F4IQV7ProteinModelPortal:F4IQV7
Proteomes:UP000006548RefSeq:NP_180711.4SMR:F4IQV7STRING:3702.AT2G31530.1
SUPFAM:0043235SUPFAM:SSF103491TAIR:AT2G31530tair10-symbols:EMB2289
tair10-symbols:SCY2TMHMM:TMhelixUniGene:At.27291UniProt:F4IQV7
Coordinates (TAIR10) chr2:+:13427060..13430308
Molecular Weight (calculated) 64715.10 Da
IEP (calculated) 9.44
GRAVY (calculated) 0.20
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)