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AT3G47390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytidine/deoxycytidylate deaminase family protein
Curator
Summary (TAIR10)
Encodes a protein that is believed to function as a pyrimidine reductase involved in riboflavin and FAD biosynthesis. phs1 was identified as a photosensitive mutant that shows reduced growth, chloroplast developmental abnormalities, reduced chlorophyll levels, increased oxidative stress, reduced NADPH/NADP+ ratios, reduced photosystem I electron transport, and reduced photosynthetic protein levels under high light conditions. Many of these abnormal phenotypes likely arise from the reduction in the levels of FAD in the phs1 mutant.
Computational
Description (TAIR10)
PHOTOSENSITIVE 1 (PHS1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02464 (InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin-specific deaminase, C-terminal (InterPro:IPR011549), Bacterial bifunctional deaminase-reductase, C-terminal (InterPro:IPR002734), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G20960.1); Has 7611 Blast hits to 7611 proteins in 2242 species: Archae - 202; Bacteria - 4931; Metazoa - 21; Fungi - 157; Plants - 91; Viruses - 17; Other Eukaryotes - 2192 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47390-MONOMERBioCyc:ARA:GQT-179-MONOMEREC:1.1.1.193EC:3.2.2.-
eggNOG:COG0117eggNOG:COG1985eggNOG:COG3236eggNOG:ENOG410IU3U
eggNOG:ENOG410JSA8EMBL:AL096860EMBL:CP002686EnsemblPlants:AT3G47390
EnsemblPlants:AT3G47390.1entrez:823893ExpressionAtlas:Q9STY4Gene3D:3.40.430.10
GeneID:823893Genevisible:Q9STY4GO:GO:0008270GO:GO:0008703
GO:GO:0008835GO:GO:0009231GO:GO:0009507GO:GO:0009644
GO:GO:0009658GO:GO:0016799GO:GO:0046443GO:GO:0050661
GO:GO:1901135gramene_pathway:1.1.1.193gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR11079
hmmpanther:PTHR11079:SF76HOGENOM:HOG000257443InParanoid:Q9STY4InterPro:IPR002125
InterPro:IPR002734InterPro:IPR004794InterPro:IPR011549InterPro:IPR012816
InterPro:IPR016193InterPro:IPR024072iPTMnet:Q9STY4KEGG:00740+3.5.4.26+1.1.1.193
OMA:DCYGDSTPaxDb:Q9STY4Pfam:PF00383Pfam:PF01872
Pfam:PF08719Pfam:Q9STY4Pfscan:PS51747PhylomeDB:Q9STY4
PIR:T12994PRIDE:Q9STY4PRO:PR:Q9STY4PROSITE:PS51747
ProteinModelPortal:Q9STY4Proteomes:UP000006548RefSeq:NP_190323.1SMR:Q9STY4
STRING:3702.AT3G47390.1SUPFAM:0051893SUPFAM:SSF53597SUPFAM:SSF53927
TAIR:AT3G47390tair10-symbols:PHS1TIGRfam:TIGR00227TIGRfam:TIGR00326
TIGRfam:TIGR02464TIGRFAMs:TIGR00227TIGRFAMs:TIGR00326TIGRFAMs:TIGR02464
UniGene:At.53819UniPathway:UPA00275UniProt:Q9STY4
Coordinates (TAIR10) chr3:+:17462094..17464655
Molecular Weight (calculated) 65505.90 Da
IEP (calculated) 7.65
GRAVY (calculated) -0.07
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSFRISSS SPLICRATLS NGDNSRNYHT TDAAFIRRAA DLSEMSAGLT SPHPNFGCVI ATSSGKVAGE GYLYAQGTKP AEALAVEAAG EFSRGATAYL
101: NMEPGDCHGD HTAVSALVQA GIERVVVGIR HPLQHLRGSA IRELRSHGIE VNVLGEDFES KVLEDARKSC LLVNAPLIHR ACSRVPFSVL KYAMTLDGKI
201: AASSGHAAWI SSKLSRTRVF ELRGGSDAVI VGGNTVRQDD PRLTARHGQG HTPTRIVMTQ SLDLPEKANL WDVSEVSTIV VTQRGARKSF QKLLASKGVE
301: VVEFDMLNPR EVMEYFHLRG YLSILWECGG TLAASAISSS VIHKVVAFVA PKIIGGSKAP SPVGDLGMVE MTQALNLIDV CYEQVGPDML VSGFLQPIPD
401: LLPVIPSEDA TVEIDPSVDP FEPSIIFFYK TWDLYGMWNI TIRYHTTVHV KWYLALSKKH NLLILHPKTL KANKFVGVEN PKAYDCVEKI RTARSPEEAA
501: LIGRSTLRQK PELVRNDWED VKIEVMYKAL KCKFSTYPHL KSMLLSTIGT VLVEASPHDL FWGGGREGEG LNYLGRLLMQ LRSEYLGESS VSAEKTSSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)