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AT1G11870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Seryl-tRNA synthetase
Curator
Summary (TAIR10)
Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.
Computational
Description (TAIR10)
Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222; Bacteria - 6777; Metazoa - 382; Fungi - 307; Plants - 156; Viruses - 0; Other Eukaryotes - 4488 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11870-MONOMEREC:6.1.1.11eggNOG:COG0172eggNOG:KOG2509
EMBL:AC002131EMBL:AF428351EMBL:AY091115EMBL:AY122978
EMBL:CP002684EnsemblPlants:AT1G11870EnsemblPlants:AT1G11870.1EnsemblPlants:AT1G11870.2
entrez:837734ExpressionAtlas:Q8RWT8Gene3D:1.10.287.40GeneID:837734
Genevisible:Q8RWT8GO:GO:0004828GO:GO:0005524GO:GO:0005739
GO:GO:0006434GO:GO:0007005GO:GO:0009507GO:GO:0009658
GO:GO:0048481GO:GO:0097056gramene_pathway:6.1.1.11gramene_pathway:TRNA-CHARGING-PWY
HOGENOM:HOG000035937InParanoid:Q8RWT8InterPro:IPR000626InterPro:IPR002314
InterPro:IPR002317InterPro:IPR006195InterPro:IPR010978InterPro:IPR015866
KEGG:00970+6.1.1.11KEGG:ath:AT1G11870KO:K01875ncoils:Coil
OMA:SWGEISSPANTHER:PTHR11778PaxDb:Q8RWT8Pfam:PF00587
Pfam:PF02403Pfscan:PS50053Pfscan:PS50862PhylomeDB:Q8RWT8
PIR:A86253PIRSF:PIRSF001529PRIDE:Q8RWT8PRINTS:PR00981
PRO:PR:Q8RWT8PROSITE:PS50053PROSITE:PS50862ProteinModelPortal:Q8RWT8
Proteomes:UP000006548RefSeq:NP_172651.1RefSeq:NP_849647.1SMR:Q8RWT8
STRING:3702.AT1G11870.2SUPFAM:SSF46589SUPFAM:SSF55681TAIR:AT1G11870
tair10-symbols:ATSRStair10-symbols:OVA7tair10-symbols:SRSTIGRfam:TIGR00414
TIGRFAMs:TIGR00414UniGene:At.26248UniPathway:UPA00906UniProt:F4IAJ3
Coordinates (TAIR10) chr1:+:4003895..4006556
Molecular Weight (calculated) 57184.80 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.31
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLHKLRLAA AVPVTFSSRL FLKPFTNTLT LGLFSRHLQP RNKPLLVRAF SASAAVQDIP ATQTSDSSAR PLWKAAIDFK WIRDNKEAVE INIRNRNSNA
101: NLEAVLQLYE NMVNLQKEVE RLREERNNVA KKMKGKLEPS ERERLVEEGK NLKESLVTLE EDLVKLKDEL QHVAQSIPNM THPDVPVGGE DSSAIRQEVG
201: SPREFSFPIK DHLQLGKDLD LIDFDSAAEV SGSKFFYLKN EAVLLEMALL NWTLSQVMKK GYTPLTTPEI VRSSIVEKCG FQPRGDNTQV YSIDGTDQCL
301: IGTAEIPVGG IHMDSILLES ALPLKYIAFS HCFRTEAGAA GAATKGLYRV HQFSKAEMFV ICQPEDSESF HQELIQIEED LFTSLGLHFK TLDMATADLG
401: APAYRKFDIE AWMPGLGRFG EISSASNCTD YQSRRLGIRY RPSEPPQTGP KKGKANLPAT KFVHTLNATA CAVPRMMVCL LENYQQEDGS VVIPEPLRPF
501: MGGIELIKPK HK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)