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AT1G60230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Radical SAM superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-467-MONOMEReggNOG:COG0820eggNOG:ENOG410IGSWEMBL:AY054695
EMBL:AY081476EMBL:CP002684EnsemblPlants:AT1G60230EnsemblPlants:AT1G60230.1
entrez:842318Gene3D:3.20.20.70GeneID:842318GO:GO:0005737
GO:GO:0008173GO:GO:0030488GO:GO:0051536GO:GO:0070475
Gramene:AT1G60230.1HAMAP:MF_01849hmmpanther:PTHR30544hmmpanther:PTHR30544:SF3
HOGENOM:HOG000217992InterPro:IPR004383InterPro:IPR007197InterPro:IPR013785
InterPro:IPR027492KEGG:ath:AT1G60230OMA:IYHFGVSPANTHER:PTHR30544
Pfam:PF04055Pfam:PF13394PhylomeDB:Q93XX3Proteomes:UP000006548
RefSeq:NP_564755.1SMR:Q93XX3STRING:3702.AT1G60230.1SUPFAM:SSF102114
TAIR:AT1G60230TIGRfam:TIGR00048TIGRFAMs:TIGR00048UniGene:At.43275
UniGene:At.64986UniProt:Q93XX3
Coordinates (TAIR10) chr1:-:22212223..22214346
Molecular Weight (calculated) 50762.60 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.07
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTTMRRLGI ITLTNSAAVV TPSLLSSTAA FPGTLTLPSP LLSDRLTNSI LFHESRSLSF SCFSSSSSSS AAYLPSLEEY PSAKGSVKRD DNQKVVLKGM
101: TYASLQEWVQ SHGFRPGQAL MLWKRLYKDN IWANNVDELE GLNKDLKRMI SEHAEFGALS FKDIRSASDG TRKILFTLDD GLVIETVVIP CDRGRTTVCV
201: SSQVGCAMNC QFCYTGRMGL KRNLTTAEIV EQAVYARRLL SHEVGSITNV VFMGMGEPFH NIDNVIKAAN IMVDENGLHF SPRKVTVSTS GLVPQLKRFL
301: RESNCALAVS LNATTDEVRN WIMPINRKYK LSLLLETLRE GLSSRHKYKV LFEYVMLAGV NDSMDDARRL VELVQGIPCK INLIQFNPHS GSQFIQTEED
401: KMIKFRNVLA EGGCTVLMRF SRGNDQMAAC GQLGMIGAVQ APVMRVPEQF RTALKASV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)