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AT5G15390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 11780 Blast hits to 11778 proteins in 2508 species: Archae - 10; Bacteria - 9274; Metazoa - 151; Fungi - 61; Plants - 151; Viruses - 0; Other Eukaryotes - 2133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1205-MONOMEReggNOG:COG0566eggNOG:KOG0838EMBL:AK228831
EMBL:AL353993EMBL:CP002688EnsemblPlants:AT5G15390EnsemblPlants:AT5G15390.1
entrez:831391Gene3D:3.40.1280.10GeneID:831391GO:GO:0003723
GO:GO:0006396GO:GO:0008173Gramene:AT5G15390.1hmmpanther:PTHR12029
hmmpanther:PTHR12029:SF45HOGENOM:HOG000006028InterPro:IPR001537InterPro:IPR029026
InterPro:IPR029028KEGG:ath:AT5G15390OMA:EDRFRCGPfam:PF00588
PhylomeDB:Q9LXE4PIR:T49974Proteomes:UP000006548RefSeq:NP_197043.1
SMR:Q9LXE4STRING:3702.AT5G15390.1SUPFAM:SSF75217TAIR:AT5G15390
UniGene:At.31808UniProt:Q9LXE4
Coordinates (TAIR10) chr5:+:4995333..4997255
Molecular Weight (calculated) 38856.10 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.25
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSCKSLIRA SISSFPFVPL PNPNFSITFI SVRAFSPLSV LHPNSSCIVT ARRTFHGAVA LSPESLTEES PKDTVKGLLT TNRGEASSLM KMERRCSLSN
101: GEGDCRGSWF PYEDRFRCGE VHLSSREVLE AVSPHMMEER TDRFRRVVEN RSYSVCLVVE GLSDFGNISA AFRSADALGI QSVHVVSCDS SKRYNGNRHV
201: SMGAEKWLDI EFWDTPKECF KVLKSRGYRI ATTHLGMDTV SIYDMDWSCP TAIVVGNEGR GISDEALELS DLRCSIPMNG MVDSFNVSVA AGILMHHAVS
301: DRTTRLGSHG DLSEAEKEIL MAEFSLRHSR SSICIAYEFA KRKQQHSTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)