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AT3G33520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.854
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin-related protein 6
Curator
Summary (TAIR10)
Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. ARP6 also is involved in globally controlling developmental responses to ambient temperature.
Computational
Description (TAIR10)
actin-related protein 6 (ARP6); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12358 Blast hits to 12072 proteins in 2463 species: Archae - 0; Bacteria - 4; Metazoa - 5326; Fungi - 3155; Plants - 1501; Viruses - 2; Other Eukaryotes - 2370 (source: NCBI BLink).
Protein Annotations
BioGrid:8476eggNOG:COG5277eggNOG:KOG0676EMBL:AC009992
EMBL:AF494760EMBL:AF494761EMBL:AF494765EMBL:AF494766
EMBL:AF494767EMBL:AF494770EMBL:AF494772EMBL:AF494773
EMBL:AF494774EMBL:AF494776EMBL:AF494777EMBL:AF494782
EMBL:AF494789EMBL:AF494792EMBL:AF494796EMBL:AF507914
EMBL:AY050786EMBL:AY084321EMBL:AY150426EMBL:BK000425
EMBL:CP002686EnsemblPlants:AT3G33520EnsemblPlants:AT3G33520.1entrez:823150
GeneID:823150Genevisible:Q8LGE3GO:GO:0005200GO:GO:0005634
GO:GO:0005737GO:GO:0006338GO:GO:0006355GO:GO:0006952
GO:GO:0007275GO:GO:0008283GO:GO:0009266GO:GO:0009910
GO:GO:0030029Gramene:AT3G33520.1hmmpanther:PTHR11937hmmpanther:PTHR11937:SF47
InParanoid:Q8LGE3IntAct:Q8LGE3InterPro:IPR004000InterPro:IPR030054
KEGG:ath:AT3G33520KO:K11662OMA:HLTSWETPANTHER:PTHR11937
PANTHER:PTHR11937:SF47PaxDb:Q8LGE3Pfam:PF00022Pfam:Q8LGE3
PhylomeDB:Q8LGE3PRIDE:Q8LGE3PRO:PR:Q8LGE3ProteinModelPortal:Q8LGE3
Proteomes:UP000006548RefSeq:NP_566861.1SMART:SM00268SMR:Q8LGE3
STRING:3702.AT3G33520.1SUPFAM:SSF53067TAIR:AT3G33520tair10-symbols:ARP6
tair10-symbols:ATARP6tair10-symbols:ESD1tair10-symbols:SUF3UniGene:At.18479
UniGene:At.18481UniProt:Q8LGE3
Coordinates (TAIR10) chr3:-:14093791..14095476
Molecular Weight (calculated) 46946.40 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.13
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)