AT1G08640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chloroplast J-like domain 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chloroplast J-like domain 1 (CJD1); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 82 Blast hits to 80 proteins in 30 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2748714..2751209 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32904.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||
| Length | 294 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPALSTSCS SVMAFSTSNA LRYHHPQISL RNSLRAPKSP SFVRLPLGKV LQSRIVIRAA SSAAGNPQSD ADFNPYEVLG VNPIEGFDKI KQTYGRKLKD 101: AQRSGDEATA ALLEKAYDKL MYAQLMNRKK GVTFGSFKVS KDIKYADKQP IIPWGPRFSR SSKNDMLINL AISVVFSAWI AIKRNVEYKP LQFMSFVFVY 201: RIFEKLKSFE APSSPIYNEE GEESGRGLRM GKRLLRSLSL VFGSILLASL AYTGFLNGIE YMGYSIPMVL YNNQELIVTA SSAFMLYVIA SFYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)