suba logo
AT5G08270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23200.1); Has 89 Blast hits to 86 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41127BBEMBL:CP002688EnsemblPlants:AT5G08270EnsemblPlants:AT5G08270.1
entrez:830723GeneID:830723Gramene:AT5G08270.1hmmpanther:PTHR33524
hmmpanther:PTHR33524:SF1InParanoid:F4K9N6KEGG:ath:AT5G08270OMA:ALCNEEL
PaxDb:F4K9N6PRIDE:F4K9N6ProteinModelPortal:F4K9N6Proteomes:UP000006548
RefSeq:NP_196444.1SMR:F4K9N6TAIR:AT5G08270UniGene:At.48996
UniGene:At.5343UniProt:F4K9N6
Coordinates (TAIR10) chr5:+:2661747..2663482
Molecular Weight (calculated) 43299.50 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.36
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFAKMMFLF GKFQQGVGVL AKSTTFAKNP RQLQFEADIN KLFMFTSYNR LGRDAEEADA EEIIEMAGKA TFSEQQKQVQ ENIHYQLQNF CSSMNEILLT
101: NIDKTKDLNE PGSESRRDNI VPAADKPIVP ETKPLKLDEV SHRLKDRVGY TLEIKPSLIP HKDAGQGCFI EGEADVGAVL AFYPGVIYSP AFHRYIPGYP
201: NVDAQNSYLI TGYDGTVINA QPWGRGGISR EVWNGSFTTP EIRTEATTTE NSSDKVWKML SRPLEGSGGV EAVIEMRNPL AFGHFINHPG KEMESNVMIC
301: PYDFLLSETE MRAYIPNVAF GNTGDVKMGR FESFLSRTGS NSSLDAHVLK TIVLVATKAL CNEELMLNYR LSNSEKRLEW YIPLDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)