AT2G31190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function, DUF647 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development. Required for auxin polar transport. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROOT UV-B SENSITIVE 2 (RUS2); INVOLVED IN: response to UV-B, auxin polar transport; LOCATED IN: mitochondrion, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT5G49820.1); Has 444 Blast hits to 440 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 112; Fungi - 71; Plants - 190; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:13291458..13293681 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48261.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQFLQEKVKL IKKEDPVMLK SPEDFPVYWF ETSDSVSHRY QFQSDGHLSM KVVDDARPVP QKMVESFLNK FFPSGYPYSV NEGYLRYTQF RALQHFSSAA 101: LSVLSTQSLL FAAGLRPTPA QATVVSWILK DGMQHVGKLI CSNLGARMDS EPKRWRILAD VLYDLGTGLE LVSPLCPHLF LEMAGLGNFA KGMATVAARA 201: TRLPIYSSFA KEGNLSDIFA KGEAISTLFN VAGIGAGIQL ASTICSSMEG KLVVGSILSV VHVYSVVEQM RGVPINTLNP QRTALIVANF LKTGKVPSPP 301: DLRFQEDLMF PERPIQDAGN VKVGRALHKA VKPSEVQRLK QVFVEEKFLL SHGKSWTDMV LEHDATGEDA LRGWLVAAYV KSMTKIYNDP DDIILQDAYD 401: KMNDVFNPFL SQVQAKGWYT DRFLDGTGTR FAW |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)