AT1G17850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5670 Blast hits to 5670 proteins in 1542 species: Archae - 13; Bacteria - 3184; Metazoa - 52; Fungi - 3; Plants - 118; Viruses - 0; Other Eukaryotes - 2300 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6146470..6148820 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50625.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVSPAATLS VSLTTPLPIT LTKARFSGEP LRLKQYVLSN QICSRPKHLL SEFKPTRRWT FSCKCRNRGR NGYAKFDDEG EDFIVVNFYR FVSIGDPEAE 101: IEKHLSFLKD LNIRGRIYLN EQGINAQYSG PSKDALAYVE WLKGDDRFSD LLVQMSPAMN RHAFPKLKLQ NKPSLYEGGI SHLPLLDPPM RAKPLEPSEW 201: KRKLKDLTDD DEASPSNSGK SYILLDVRNG YEWDVGHFRG AHRPEVDCFR NTSFGLSDEK EAPSDPLINV DKEKTDILMY CTGGIRCDVY STVLRQRGFK 301: NLYTLKGGVS HYLKEEGTAE WVGNLFVFDS RLSLPPAAYN DNVVDKAVGD NVVDEAGRTP QTPVDTSFAR CYLCNSQVQE LRHRNCANLD CNRLFLCCAE 401: CVVDLKGCCC SDCISAPRLR PVLHGVKRYE KWHVYRDSEE QNAPLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)