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AT2G40690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD-dependent glycerol-3-phosphate dehydrogenase family protein
Curator
Summary (TAIR10)
Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.
Computational
Description (TAIR10)
GLY1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase [NAD+] activity; INVOLVED IN: systemic acquired resistance, glycerol-3-phosphate metabolic process, glycerolipid biosynthetic process, glycerolipid metabolic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD-dependent glycerol-3-phosphate dehydrogenase family protein (TAIR:AT5G40610.1); Has 8663 Blast hits to 8662 proteins in 2795 species: Archae - 24; Bacteria - 5277; Metazoa - 643; Fungi - 297; Plants - 161; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).
Protein Annotations
EC:1.1.1.8eggNOG:COG0240eggNOG:KOG2711EMBL:AY050968
EMBL:AY114078EMBL:CP002685EnsemblPlants:AT2G40690EnsemblPlants:AT2G40690.1
entrez:818664Gene3D:1.10.1040.10Gene3D:3.40.50.720GeneID:818664
Genevisible:Q949Q0GO:GO:0004367GO:GO:0005975GO:GO:0006650
GO:GO:0008654GO:GO:0009331GO:GO:0009627GO:GO:0009941
GO:GO:0045017GO:GO:0046168GO:GO:0046486GO:GO:0051287
Gramene:AT2G40690.1gramene_pathway:1.1.1.8gramene_pathway:PWY-6118HAMAP:MF_00394
hmmpanther:PTHR11728hmmpanther:PTHR11728:SF13HOGENOM:HOG000246853InParanoid:Q949Q0
InterPro:IPR006109InterPro:IPR006168InterPro:IPR008927InterPro:IPR011128
InterPro:IPR013328InterPro:IPR016040KEGG:00564+1.1.1.94KEGG:ath:AT2G40690
KO:K00006OMA:DYLPGVEPaxDb:Q949Q0Pfam:PF01210
Pfam:PF07479Pfam:Q949Q0PhylomeDB:Q949Q0PRIDE:Q949Q0
PRINTS:PR00077PRO:PR:Q949Q0PROSITE:PS00957ProteinModelPortal:Q949Q0
Proteomes:UP000006548RefSeq:NP_565939.1scanprosite:PS00957SMR:Q949Q0
STRING:3702.AT2G40690.1SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT2G40690
tair10-symbols:GLY1tair10-symbols:SFD1UniGene:At.26537UniPathway:UPA00940
UniProt:Q949Q0
Coordinates (TAIR10) chr2:+:16974107..16976241
Molecular Weight (calculated) 45095.10 Da
IEP (calculated) 8.67
GRAVY (calculated) 0.14
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASVQPACL DLHFSGKHPP LLKHNAIIVR CVSSPNVIPE ADSISGPPDI INTNRDQRKV VRIAWEKLVR WSRSLRAKAK TDVLERTRKV VVLGGGSFGT
101: AMAAHVARRK EGLEVNMLVR DSFVCQSINE NHHNCKYFPE HKLPENVIAT TDAKAALLDA DYCLHAVPVQ FSSSFLEGIA DYVDPGLPFI SLSKGLELNT
201: LRMMSQIIPI ALKNPRQPFV ALSGPSFALE LMNNLPTAMV VASKDKKLAN AVQQLLASSY LRINTSSDVT GVEIAGALKN VLAIAAGIVD GMNLGNNSMA
301: ALVSQGCSEI RWLATKMGAK PTTITGLSGT GDIMLTCFVN LSRNRTVGVR LGSGETLDDI LTSMNQVAEG VATAGAVIAL AQKYNVKLPV LTAVAKIIDN
401: ELTPTKAVLE LMNLPQIEEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)