AT3G45890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF647 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16871697..16874100 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66388.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSCSYLLSGD ASVVASRRWS DVSSRQRLFL PRQSLRQPSG SSFSRCVRLV ANVNDHFSKQ SLATRNCLAS VFSADLGGSN GNNDNGNGGG GGGDGGGDNS 101: DDSSFDLRYL CFLLLGLSCF FHFRLSAASA IAKDQNSDSN GDAVKETVWE VRGSKRKRLV PDFVKDEFVS EESAFELSSS LTPENLLAQC RNLLTQFLLP 201: EGFPNSVTSD YLDYSLWRGV QGIASQISGV LATQSLLYAV GLGKGAIPTA AAINWVLKDG IGYLSKIMLS KYGRHFDVHP KGWRLFADLL ENAAFGMEML 301: TPVFPQFFVM IGAAAGAGRS AAALIQAATR SCFNAGFASQ RNFAEVIAKG EAQGMVSKSV GILLGIVVAN CIGTSTSLAL AAFGVVTTIH MYTNLKSYQC 401: IQLRTLNPYR ASLVFSEYLI SGQAPLIKEV NDEEPLFPTV RFSNMKSPEK LQDFVLSSEA KAAAADIEER LQLGSKLSDV IHNKEEAIAL FDLYRNEGYI 501: LTEHKGRFCV MLKESSTPQD MLRSLFQVNY LYWLEKNAGI EPASTYSDCK PGGRLHISLD YVRREFEHAK EDSESVGWVT EGLIARPLPT RIRLGHDREL 601: LLSSPNSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)