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AT1G02060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37230.1); Has 43508 Blast hits to 14040 proteins in 293 species: Archae - 4; Bacteria - 48; Metazoa - 396; Fungi - 632; Plants - 41173; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:CP002684EMBL:U89959
EnsemblPlants:AT1G02060EnsemblPlants:AT1G02060.1entrez:839279Gene3D:1.25.40.10
GeneID:839279Genevisible:O81908GO:GO:0009507Gramene:AT1G02060.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF863HOGENOM:HOG000083215InParanoid:O81908
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G02060OMA:CMKQEID
PaxDb:O81908Pfam:O81908Pfam:PF01535Pfam:PF13041
Pfscan:PS51375PhylomeDB:O81908PIR:F86152PRIDE:O81908
PRO:PR:O81908PROSITE:PS51375ProteinModelPortal:O81908Proteomes:UP000006548
RefSeq:NP_171708.1SMR:O81908STRING:3702.AT1G02060.1SUPFAM:SSF48452
TAIR:AT1G02060TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.43436
UniProt:O81908
Coordinates (TAIR10) chr1:-:360918..363050
Molecular Weight (calculated) 80836.40 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.13
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSVPKLHA LFVSKSQPVL RAAKVTNEER STKSKLARSL ARAVNSNPWS DELESSLSSL HPSQTISRTT VLQTLRLIKV PADGLRFFDW VSNKGFSHKE
101: QSFFLMLEFL GRARNLNVAR NFLFSIERRS NGCVKLQDRY FNSLIRSYGN AGLFQESVKL FQTMKQMGIS PSVLTFNSLL SILLKRGRTG MAHDLFDEMR
201: RTYGVTPDSY TFNTLINGFC KNSMVDEAFR IFKDMELYHC NPDVVTYNTI IDGLCRAGKV KIAHNVLSGM LKKATDVHPN VVSYTTLVRG YCMKQEIDEA
301: VLVFHDMLSR GLKPNAVTYN TLIKGLSEAH RYDEIKDILI GGNDAFTTFA PDACTFNILI KAHCDAGHLD AAMKVFQEML NMKLHPDSAS YSVLIRTLCM
401: RNEFDRAETL FNELFEKEVL LGKDECKPLA AAYNPMFEYL CANGKTKQAE KVFRQLMKRG VQDPPSYKTL ITGHCREGKF KPAYELLVLM LRREFVPDLE
501: TYELLIDGLL KIGEALLAHD TLQRMLRSSY LPVATTFHSV LAELAKRKFA NESFCLVTLM LEKRIRQNID LSTQVVRLLF SSAQKEKAFL IVRLLYDNGY
601: LVKMEELLGY LCENRKLLDA HTLVLFCLEK SQMVDIDTCN TVIEGLCKHK RHSEAFSLYN ELVELGNHQQ LSCHVVLRNA LEAAGKWEEL QFVSKRMATL
701: RESDDCSVLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)