AT1G03270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.775 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CBS domain-containing protein with a domain of unknown function (DUF21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14240.1); Has 10325 Blast hits to 10105 proteins in 2459 species: Archae - 102; Bacteria - 7685; Metazoa - 330; Fungi - 275; Plants - 225; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:799191..802436 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54664.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVLSTLALV RAAYSLNSFV FEAEDIRFGS PWWFVVVGVA CFLVLFAGIM SGLTLGLMSL GLVELEILQQ SGSSAEKKQA AAILPVVKKQ HQLLVTLLLC 101: NAAAMEALPI CLDKIFHPFV AVLLSVTFVL AFGEIIPQAI CSRYGLAVGA NFLWLVRILM IICYPIAYPI GKVLDAVIGH NDTLFRRAQL KALVSIHSQE 201: AGKGGELTHE ETMIISGALD LSQKTAEEAM TPIESTFSLD VNTKLDWETI GKILSRGHSR IPVYLGNPKN IIGLLLVKSL LTVRAETEAP VSSVSIRKIP 301: RVPSDMPLYD ILNEFQKGSS HMAAVVKVKD KDKKNNMQLL SNGETPKENM KFYQSSNLTA PLLKHESHDV VVDIDKVPKH VKNRGRNFQQ NGTVTRDLPC 401: LLEDNEDAEV IGIITLEDVF EELLQAEIVD ETDVYIDVHK RVRVAAAAAA AVSSITRASP AEIQSKVGQT VKKLVGKEAR GTKNYTTKIT EPLLAESDR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)