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AT3G02890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 3422 Blast hits to 2706 proteins in 325 species: Archae - 2; Bacteria - 367; Metazoa - 1746; Fungi - 295; Plants - 487; Viruses - 5; Other Eukaryotes - 520 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIKBeggNOG:ENOG410YDGUEMBL:CP002686EnsemblPlants:AT3G02890
EnsemblPlants:AT3G02890.1entrez:821192Gene3D:3.30.40.10GeneID:821192
GO:GO:0008270Gramene:AT3G02890.1hmmpanther:PTHR33304InParanoid:F4IYH6
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083KEGG:ath:AT3G02890
OMA:FNSHSSDPaxDb:F4IYH6PRIDE:F4IYH6ProteinModelPortal:F4IYH6
Proteomes:UP000006548RefSeq:NP_186939.2SMART:SM00249SMR:F4IYH6
STRING:3702.AT3G02890.1SUPFAM:SSF57903TAIR:AT3G02890UniGene:At.41063
UniProt:F4IYH6
Coordinates (TAIR10) chr3:+:640828..645303
Molecular Weight (calculated) 108871.00 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.84
Length 994 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRRVGNRP MGRRGRLEIQ SGTCNVCSAP CSSCMHHNAE FSGSKSDESS DENSHGVLAS QCSFNGDNLL RSSGVNAPGS SHNTSSEASH LVNSNHDTSS
101: ENAESKEIIR SSDISHGPLL DRPHKDQDSM KVDSCNDHQA RSTLGQGKVK EKSGAKNNEE KKNTLTGSSK HSGPRVGKSG ENVLLNKADE SNTSAMSDSE
201: SENDPEMLEL DVKVCDTCGD AGREDLLAIC SRCSDGAEHT YCMRVMLKKV PKGYWLCEEC KFAEKAEKHK LETKRKRESE VNVNTQISSK RHIDKFEAVP
301: DSKRLAVGAQ IGSPKRSVLP RMSTLSRETS FKGLEKPTRK LAHYSSFNSH SSDDTESTRS TDSQLQSPKG SFLKSNSFNS LSSRSKVRPV DDDMLPRQKT
401: GNENSSLEVK EGFSKNVGKS MSSRCIDVGS SNCNDSKVKG SKQLKDWSTE ANPSASISRG NSSIPYAKSP RDLKDLQSDG KQGSLSKQAR HLSRNRLEDI
501: VASVGDSSKN EKCSSSEQIS SEAKCKDELA QVDGVPRSRE FREAGEKTKD AVGNHQKRNI GEDNNKGNRL RAAVDAALRK KPSFSKNRGL EQSDLPPVSN
601: VDSGCNKALK CLSSKVPVIR DWPVGFQGLP GGHPNLRTDK QTNTVNEKQF TLAGTDATTA SQSVEPEVND PSVQSVMRDL PVAAPNVLST TSAIPKPEYI
701: WQGDLEVQKS RNLSAMHSGI QAYLSTLASP KVVEVVKQFP EKVTLNEVPR LSSWPAQFQD TGAKEQHVAL FFFAKDIESY EKNYKPLVDN MIQKDLALKG
801: NLEGVELLIF ASNQLPQDCQ RWNMLFFLWG VFRGKKESCS NPPKNTPLPA SCVSPNRDTF RHENPSNKKS LTDRTLSRMQ SCMKEEDAKE GKACSGTEKE
901: NAFSVSYGEG EVDVETEEGE IGVSPQLKYE KTAGPGTVKS ADMNQRVNVD DLNKEGLCEG PANKKLKTVT GVETGCSIVR RDTSVHKFAS RKFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)