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AT4G34430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding family protein
Curator
Summary (TAIR10)
Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).
Computational
Description (TAIR10)
CHB3; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 16492 Blast hits to 11005 proteins in 907 species: Archae - 40; Bacteria - 1715; Metazoa - 6618; Fungi - 2333; Plants - 955; Viruses - 102; Other Eukaryotes - 4729 (source: NCBI BLink).
Protein Annotations
BioGrid:14876eggNOG:COG5259eggNOG:KOG1279EMBL:AK117284
EMBL:AL023094EMBL:AL035521EMBL:AL161585EMBL:AY074306
EMBL:AY096454EMBL:CP002687EnsemblPlants:AT4G34430EnsemblPlants:AT4G34430.1
EnsemblPlants:AT4G34430.2entrez:829594Gene3D:1.10.10.10Gene3D:1.10.10.60
GeneID:829594Genevisible:Q8VY05GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0008270
GO:GO:0016568hmmpanther:PTHR12802hmmpanther:PTHR12802:SF39HOGENOM:HOG000083670
InParanoid:Q8VY05IntAct:Q8VY05InterPro:IPR000433InterPro:IPR001005
InterPro:IPR007526InterPro:IPR009057InterPro:IPR011991InterPro:IPR017884
InterPro:IPR032451iPTMnet:Q8VY05KEGG:ath:AT4G34430KO:K11649
MINT:MINT-8061648ncoils:CoilOMA:KEEGANDPaxDb:Q8VY05
Pfam:PF00249Pfam:PF00569Pfam:PF04433Pfam:PF16495
Pfam:Q8VY05Pfscan:PS50135Pfscan:PS50934Pfscan:PS51293
PhylomeDB:Q8VY05PIR:T04789PIR:T05263PRIDE:Q8VY05
PRO:PR:Q8VY05PROSITE:PS01357PROSITE:PS50135PROSITE:PS50934
PROSITE:PS51293ProteinModelPortal:Q8VY05Proteomes:UP000006548RefSeq:NP_195169.3
RefSeq:NP_849563.1RefSeq:NP_849564.1RefSeq:NP_974682.1scanprosite:PS01357
SMART:SM00291SMART:SM00717SMR:Q8VY05STRING:3702.AT4G34430.4
SUPFAM:SSF46689SUPFAM:SSF57850TAIR:AT4G34430tair10-symbols:ATSWI3D
tair10-symbols:CHB3UniGene:At.28075UniProt:Q8VY05
Coordinates (TAIR10) chr4:+:16461069..16464993
Molecular Weight (calculated) 107802.00 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.77
Length 985 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)