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AT2G47210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb-like transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), DNA methyltransferase 1-associated 1 (InterPro:IPR008468); Has 383 Blast hits to 375 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 145; Plants - 43; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSA4eggNOG:KOG2656EMBL:AB493595EMBL:AC002337
EMBL:AY064024EMBL:AY096610EMBL:CP002685EnsemblPlants:AT2G47210
EnsemblPlants:AT2G47210.1entrez:819334Gene3D:1.10.10.60GeneID:819334
GO:GO:0000812GO:GO:0003677GO:GO:0003714GO:GO:0005634
GO:GO:0006281GO:GO:0006338GO:GO:0006351GO:GO:0035267
GO:GO:0043967GO:GO:0043968GO:GO:0045892Gramene:AT2G47210.1
hmmpanther:PTHR12855hmmpanther:PTHR12855:SF10HOGENOM:HOG000264889IntAct:Q8VZL6
InterPro:IPR001005InterPro:IPR008468InterPro:IPR009057InterPro:IPR027109
InterPro:IPR032563iPTMnet:Q8VZL6KEGG:ath:AT2G47210KO:K11324
OMA:AFANCEYPANTHER:PTHR12855PaxDb:Q8VZL6Pfam:PF05499
Pfam:PF16282Pfam:Q8VZL6PhylomeDB:Q8VZL6PIR:D84912
PRIDE:O22895PRO:PR:Q8VZL6ProteinModelPortal:Q8VZL6Proteomes:UP000006548
RefSeq:NP_850470.1SMART:SM00717SMR:Q8VZL6STRING:3702.AT2G47210.1
SUPFAM:SSF46689TAIR:AT2G47210UniGene:At.27099UniProt:Q8VZL6
Coordinates (TAIR10) chr2:+:19379039..19382204
Molecular Weight (calculated) 49826.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.73
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDLKR RPPADEKVAW KWLSFTNSAR KDDLQLYHWV RVVNDVPPTG
101: DYSFAKYNKS VDILKYTDEE YENHLTDSVW TKEETDQLFE FCQNFDLRFV VIADRFPVSR TVEELKDRYY SVNRALLRAR AQSPADVANH PLMKEPYDIT
201: RDRERKRALS MVLSQSRHQE KKDAEILAEA KRITEMRLAA RRAEEPDVSA NENAGLDKAD GVVPGRSVSP TSNSQLPATA VAPSTLTMAD YASTLASLRM
301: LHVYLRTYGL EQMVQAASSA VGLRTIKRVE QTLQDLGVNL KPKVPTKTVC DEHLELRKEI LTLLNLQKQL QYKESEGSSH REGSYAAMPD TPKDRVFAPD
401: PFSFGAERPI KKEQKRKGPG RQADTPSPAH KRPRKLKASD L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)