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AT1G80190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : partner of SLD five 1
Curator
Summary (TAIR10)
Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.
Computational
Description (TAIR10)
partner of SLD five 1 (PSF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication initiation; LOCATED IN: GINS complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf1 (InterPro:IPR005339); Has 334 Blast hits to 334 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 142; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
DNASU:844359eggNOG:COG5230eggNOG:KOG3303EMBL:AC009322
EMBL:AK175552EMBL:BT010484EMBL:CP002684EnsemblPlants:AT1G80190
EnsemblPlants:AT1G80190.1entrez:844359GeneID:844359GO:GO:0000811
GO:GO:0006270GO:GO:0009507GO:GO:0032508GO:GO:0043138
GO:GO:1902983Gramene:AT1G80190.1hmmpanther:PTHR12914hmmpanther:PTHR12914:SF2
HOGENOM:HOG000192102IntAct:Q9SSC0InterPro:IPR005339InterPro:IPR021151
KEGG:ath:AT1G80190KO:K10732OMA:LTRNKRCPANTHER:PTHR12914
Pfam:PF05916PhylomeDB:Q9SSC0PIR:F96833Proteomes:UP000006548
Reactome:R-ATH-176974RefSeq:NP_178136.1SMR:Q9SSC0STRING:3702.AT1G80190.1
SUPFAM:SSF158573TAIR:AT1G80190tair10-symbols:PSF1UniGene:At.33965
UniGene:At.50812UniProt:Q9SSC0
Coordinates (TAIR10) chr1:+:30159476..30161115
Molecular Weight (calculated) 23321.10 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.52
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGRKGYQLI KDFATGEKGQ LKPFNSKLFD ETIEECDQNH HLIQSLIRKM QQEGLDVQNN RNADHYGALI HHLALIRNKR CLMAYVYNRA EIVRDLAWRV
101: GLELLDLPSE IQEKLTTLEK EYFKNHSVAL KSYMGKVGIE LNVDMVPPKD PYIKVRILDD IDEGIVLSDK TTNFARHSMH FLKRTDAEPY IARGQMEELT
201: G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)