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AT5G52910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : timeless family protein
Curator
Summary (TAIR10)
homolog of Drosophila timeless
Computational
Description (TAIR10)
TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQM6eggNOG:KOG1974EMBL:AB009055EMBL:CP002688
EnsemblPlants:AT5G52910EnsemblPlants:AT5G52910.1entrez:835368GeneID:835368
Gramene:AT5G52910.1hmmpanther:PTHR22940hmmpanther:PTHR22940:SF4HOGENOM:HOG000084060
InterPro:IPR006906InterPro:IPR007725KEGG:ath:AT5G52910KO:K03155
OMA:ISKWRCAPfam:PF04821Pfam:PF05029PhylomeDB:Q9FLX0
Proteomes:UP000006548RefSeq:NP_200103.1STRING:3702.AT5G52910.1TAIR:AT5G52910
tair10-symbols:ATIMUniGene:At.29587UniProt:Q9FLX0
Coordinates (TAIR10) chr5:-:21457774..21463159
Molecular Weight (calculated) 128910.00 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.57
Length 1141 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDVEERISTK KKIDLEGLSV ICSDLGLPEE DEDRRRIGYS KSEYCLDNLK DLLRFLRRDD PESREVFKQV CAWNIVSKDL IPIIEHYQDE HNLVLNAVKV
0101: LVFLTMPIEP SSDDIPQQLE YLWGLKSAIT FSNIVAVIVS LLEAPLENLE LDVFNEEDWK LVQLVLTLFR NLLAIHDVSP IQKAGESTCY FLSLRDQFLE
0201: VLSRENVMDI VLVITQTIEG FNSLLRHDNL LLLEIYHYIL LGQDMELVAK APEKLDQGKQ ASVDSLKTLM KEEEVKRKLA RLNNMNQRHS QFGGTFTRVT
0301: MDGTKAVLKG IPSTTESTML KPQQGRGATE KIVWEHGPMS VTNDKSLCED IEKEHPSIQN SDIVTFFQVA QSITSFQFHK SSASSPAIET EETSELTTNQ
0401: KAGVNFSKSD ICAPIAATIN DRMFLLVISK WRCAFDGLKE TKDFKFLSAA SSLVKTMLCL LDLVIKLLPE DSKEAFTVRI LLYKLFYDQT DQGMCQFILN
0501: LVRSFDTHKQ PKSELGDLVE SIHIIVGLME NLQGRGTLRV SKKSRKARKK KPKGNKEATV HKLSENHPST SNEASTAKSI PMVDSTVSTE DGPMDVPPNK
0601: PEASNLETET DETQQMHSPK SNNVVDDLSS GSDDSSDGEE QTATDEVDFK VSTFISAFAS NSIIQNLCWL LKFYKSNPKQ TNHHVISILR RITEDLELAP
0701: MLYQLSLLIT FHKILDEQKV CPCKDYENIV TFLTDLVRNM LKKMKSQPLL FVEILFSKTR KECHYINAEY MLHELGHLRK QMGNQEKFSG TEEFGTSSDK
0801: GWAHRSLADA LGDDEADVVI SYDQGFQNED DDMVEDKSAG PSKRKRRLVL DGDMDIKIKD LYDRYKDDKN CSRLIAENLV PDGGISAAQV TNKLKQLGLE
0901: TRKRLRRGGT DHLDATSLAQ PSNTRKRVSS FSKEQETLIK ELYKKFKDEK RCCYLIASEL GSENTYTTAQ VSRKLKQLGL RLPRGKKSEA GMMLKDDHDD
1001: SSADESEDET LLAFKNRKSR KNQKNKQQTG SINEITPGGS EDNTERNETS LHEPTAGEEE DNDQSYITRE SRQSETDVHI SDNGPSTSLP EDPNLSSDNE
1101: LEDDELADWG DDSAAGGASL TQSPLSRRKL KMVLDKDDED D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)