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AT2G29680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cell division control 6
Curator
Summary (TAIR10)
Encodes cell division control protein 6 (CDC6).
Computational
Description (TAIR10)
cell division control 6 (CDC6); INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: Cell division control, Cdc6 (TAIR:AT1G07270.1); Has 1212 Blast hits to 1203 proteins in 331 species: Archae - 284; Bacteria - 0; Metazoa - 344; Fungi - 285; Plants - 98; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1474eggNOG:KOG2227EMBL:AC005496EMBL:AF275940
EMBL:AJ271606EMBL:AJ293020EMBL:CP002685EnsemblPlants:AT2G29680
EnsemblPlants:AT2G29680.1EnsemblPlants:AT2G29680.2entrez:817518ExpressionAtlas:O82387
Gene3D:1.10.10.10Gene3D:3.40.50.300GeneID:817518Genevisible:O82387
GO:GO:0005634GO:GO:0006270GO:GO:0042023GO:GO:0051301
hmmpanther:PTHR10763HOGENOM:HOG000083002InParanoid:O82387IntAct:O82387
InterPro:IPR003593InterPro:IPR011991InterPro:IPR015163InterPro:IPR016314
InterPro:IPR027417iPTMnet:O82387KEGG:ath:AT2G29680KO:K02213
OMA:NALEICAPaxDb:O82387Pfam:O82387Pfam:PF09079
Pfam:PF13401PhylomeDB:O82387PIR:C84699PIRSF:PIRSF001767
PRIDE:O82387PRO:PR:O82387ProteinModelPortal:O82387Proteomes:UP000006548
Reactome:R-ATH-113510Reactome:R-ATH-68689Reactome:R-ATH-68867Reactome:R-ATH-68949
Reactome:R-ATH-68962Reactome:R-ATH-69017Reactome:R-ATH-69205Reactome:R-ATH-69298
RefSeq:NP_565686.1RefSeq:NP_850137.1SMART:SM01074SMR:O82387
STRING:3702.AT2G29680.1SUPFAM:SSF46785SUPFAM:SSF52540TAIR:AT2G29680
tair10-symbols:ATCDC6tair10-symbols:CDC6UniGene:At.26153UniProt:O82387
Coordinates (TAIR10) chr2:+:12689586..12692854
Molecular Weight (calculated) 59844.20 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.14
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG TVFCVINVHF LKSVSYGQTS
301: FKFKVRICPP GVANAIDLAD RFLPKLKSLN CKPLVVTFRA YSKDQILRIL QERLVALPFV AFQSNALEIC ARKVSAASGD MRKALCVCRS ALEILEIEVR
401: GSIDQEPKGP VPECQVVKMD HMIAALSKTF KSPIVDTIQS LPQHQQIIVC SAAKAFRGSK KDRTIAELNK LYLEICKSSM ITPAGITEFS NMCTVLNDQG
501: ILKLSLARDD KLKRVSLRVD EADITFALKE IRFFRNCLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)