AT3G23740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8552077..8554730 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 63107.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||
| Length | 566 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAESNQIPRK RMRFSSSPAT EILPQRKSQN QRIATTVSQS RNRSSVHHSP SLYQKIDSKI TPTYPRATIK DIRLRRVFSP TPISTDCECN CKDKNQTKRQ 101: NHECLCDCDN SNSDDFAQTT PPDSELLAIS EEINGSVVNK SDTNLWRKSV LLPCSRPKIF KNTGPFSYKR LLPYLMQASD DGTSSSSRCS KSLSQNITKP 201: VSQSMDSVYD KDSTGSFCRD TSPLKSVIAS TPNKNAAFSR GKLFKTPGSV NYRRMLPYLK DIQEDNPYPQ KNTEEVISSP MLNSESDNEG TQEVVTSNVT 301: RESGTSSDEN EEPLPCERVP VNLEQSDPDK EQETQIKHVI PDTENNLGSE IPLSSPLVGS RSSSEVNSSA LHNTFVDNLV GEENMNGAEI TEAKISAEEL 401: EAHSSDATAE LVDPSVILAT PSSFSPSKGI LKRSMRGCRG ICSCLNCSSF RLHAERAFEF SRNQLQDTEV MVLDLVGEIS HLRDLLEKYN SADHSEPYKS 501: QAGEASKRAC EAAELAKSRL HQMNDDLQIH YRIPNEQRAR VKFAHYIHEK TIVKASEPNK LISRSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)