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AT3G02920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Replication protein A, subunit RPA32
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2); Has 524 Blast hits to 524 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 124; Plants - 108; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
BioGrid:6520EMBL:AC018363EMBL:AK117794EMBL:AY084806
EMBL:BT024909EMBL:CP002686EnsemblPlants:AT3G02920EnsemblPlants:AT3G02920.1
entrez:821187ExpressionAtlas:Q8LFJ8Gene3D:1.10.10.10Gene3D:2.40.50.140
GeneID:821187Genevisible:Q8LFJ8GO:GO:0003677GO:GO:0005634
GO:GO:0006260GO:GO:0006281GO:GO:0006310hmmpanther:PTHR13989
hmmpanther:PTHR13989:SF20HOGENOM:HOG000265427InParanoid:Q8LFJ8InterPro:IPR004365
InterPro:IPR011991InterPro:IPR012340InterPro:IPR014646InterPro:IPR014892
iPTMnet:Q8LFJ8Pfam:PF01336Pfam:PF08784Pfam:Q8LFJ8
PhylomeDB:Q8LFJ8PIRSF:PIRSF036949PRIDE:Q8LFJ8PRO:PR:Q8LFJ8
ProteinModelPortal:Q8LFJ8Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314
Reactome:R-ATH-110320Reactome:R-ATH-174437Reactome:R-ATH-5651801Reactome:R-ATH-5655862
Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696395Reactome:R-ATH-5696397
Reactome:R-ATH-5696400Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68962
Reactome:R-ATH-69166RefSeq:NP_566188.1SMR:Q8LFJ8SUPFAM:SSF46785
SUPFAM:SSF50249TAIR:AT3G02920tair10-symbols:ATRPA32Btair10-symbols:RPA32B
UniGene:At.41060UniProt:Q8LFJ8
Coordinates (TAIR10) chr3:-:651844..654189
Molecular Weight (calculated) 30958.80 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.34
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGGDFDGNA AFAGGGFMPS QATTQAHESS SSLKNRDVRT LLPLTLKQLS SASTTGESNF SIDGVDIKTV VIVGRISRME NRITQVDFVV DDGTGWVDCV
101: RWCHARQETE EMEAVKLGMY VRLHGHLKIF QGKRSVNVFS VRPVTDFNEI VHHFTECMYV HMYNTKLRGG SITQDTATPR PQMPYSTMPT PAKPYQTGPS
201: NQFPNQFNDS MHGVKQTVLN YLNQPMHIVS EAGVHCDIIA RELRIPLLQV KEALEQLSND GCIYSTLDET CFKSTANA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)