suba logo
AT3G12530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PSF2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 396 Blast hits to 382 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 167; Plants - 52; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioGrid:5766DNASU:820432eggNOG:COG5093eggNOG:KOG4071
EMBL:AC069474EMBL:AP002047EMBL:AP002055EMBL:BT010931
EMBL:BT020600EMBL:CP002686EnsemblPlants:AT3G12530EnsemblPlants:AT3G12530.1
entrez:820432ExpressionAtlas:Q9C7A8GeneID:820432Genevisible:Q9C7A8
GO:GO:0000727GO:GO:0000811GO:GO:0031298GO:GO:0032508
GO:GO:1902975hmmpanther:PTHR12772HOGENOM:HOG000246603InParanoid:Q9C7A8
IntAct:Q9C7A8InterPro:IPR007257InterPro:IPR021151KEGG:ath:AT3G12530
KO:K10733OMA:IPNFNHDPANTHER:PTHR12772PaxDb:Q9C7A8
Pfam:PF05916Pfam:Q9C7A8PhylomeDB:Q9C7A8PIRSF:PIRSF028998
PRIDE:Q9C7A8PRO:PR:Q9C7A8ProteinModelPortal:Q9C7A8Proteomes:UP000006548
Reactome:R-ATH-176974RefSeq:NP_001030680.1RefSeq:NP_187859.2SMR:Q9C7A8
STRING:3702.AT3G12530.1SUPFAM:SSF158573SUPFAM:SSF160059TAIR:AT3G12530
tair10-symbols:PSF2UniGene:At.39583UniProt:Q9C7A8
Coordinates (TAIR10) chr3:-:3972604..3973864
Molecular Weight (calculated) 24292.10 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.46
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGQTDPHIS LFSPQEVEFM AEDELVEIVP NMNMEQLNFI SGDFGRFIPQ IPTKVPLWLA VALKRRGKCT FRPPGWMSVD NLTQILEAER ESQSTFQALP
101: FSYVEIARLL FDHARDDIPD MYMVRSLVED IRDVRLHKLE TNLGSFQGTS AVKISNVSAM EVNIVRPFVI RALEAFYKHD KPEADVDRDT RSSRQQRETN
201: NEPRRPLRQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)